Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM88BA6NKF7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM88BA6NKF7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
TMEM88BA6NKF7 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM88BA6NKF7 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMEM88BA6NKF7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 MIR1227-201ENST00000408484 88 ntBASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 RN7SL181P-201ENST00000462921 277 ntBASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.41■□□□□ 0.54
TMEM88BA6NKF7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 BNIP3P1-202ENST00000550043 1585 ntBASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 FGFR3P1-201ENST00000449999 601 ntBASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 RN7SL48P-201ENST00000579283 293 ntBASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 AC005357.2-202ENST00000590507 1060 ntBASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM88BA6NKF7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
TMEM88BA6NKF7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.39■□□□□ 0.54
TMEM88BA6NKF7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
TMEM88BA6NKF7 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.39■□□□□ 0.54
TMEM88BA6NKF7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TMEM88BA6NKF7 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 AC019193.1-201ENST00000506678 823 ntBASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM88BA6NKF7 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms