Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTDP1Q9Y5B0 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTDP1Q9Y5B0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AC114501.2-201ENST00000439631 535 ntBASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 API5-211ENST00000534695 560 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 TPRX2P-201ENST00000535362 881 ntBASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AC004461.2-201ENST00000629517 803 ntBASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CTDP1Q9Y5B0 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 CU639417.3-201ENST00000624240 1404 ntBASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 TIMM17BP1-201ENST00000545713 516 ntBASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDP1Q9Y5B0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 CYP4F24P-201ENST00000586049 1580 ntBASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 AC138969.3-201ENST00000546612 1459 ntBASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 AC138932.2-201ENST00000548268 1459 ntBASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 AC126755.4-201ENST00000549796 1459 ntBASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 AC098614.1-201ENST00000368528 745 ntBASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 MEP1AP4-201ENST00000423244 1087 ntBASIC18.6■□□□□ 0.57
CTDP1Q9Y5B0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms