Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 REXO1L1P-202ENST00000608646 1974 ntBASIC16.07■□□□□ 0.16
TREX1Q9NSU2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TREX1Q9NSU2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TREX1Q9NSU2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TREX1Q9NSU2 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.07■□□□□ 0.16
TREX1Q9NSU2 CICP13-201ENST00000422015 2789 ntBASIC16.07■□□□□ 0.16
TREX1Q9NSU2 CROCCP1-201ENST00000426910 5675 ntBASIC16.07■□□□□ 0.16
TREX1Q9NSU2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 AC004461.1-201ENST00000412461 403 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 FAM58DP-201ENST00000428076 619 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 EEF1DP4-201ENST00000446006 880 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 AL139010.1-201ENST00000454878 894 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 AC092850.2-201ENST00000623821 2697 ntBASIC16.06■□□□□ 0.16
TREX1Q9NSU2 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TREX1Q9NSU2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 RPSAP43-201ENST00000402237 625 ntBASIC16.05■□□□□ 0.16
TREX1Q9NSU2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TREX1Q9NSU2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TREX1Q9NSU2 AL627223.1-201ENST00000416693 442 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms