Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 RARRES2P9-201ENST00000565168 469 ntBASIC17.28■□□□□ 0.36
SIX2Q9NPC8 MIR4469-201ENST00000583919 79 ntBASIC17.28■□□□□ 0.36
SIX2Q9NPC8 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX2Q9NPC8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 AC092127.1-201ENST00000567093 3455 ntBASIC17.27■□□□□ 0.36
SIX2Q9NPC8 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 AC004461.1-201ENST00000412461 403 ntBASIC17.27■□□□□ 0.36
SIX2Q9NPC8 GPS2P2-201ENST00000430745 888 ntBASIC17.27■□□□□ 0.36
SIX2Q9NPC8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 BANF1P1-201ENST00000553684 263 ntBASIC17.27■□□□□ 0.36
SIX2Q9NPC8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.27■□□□□ 0.36
SIX2Q9NPC8 OR6D1P-203ENST00000641209 4860 ntBASIC17.27■□□□□ 0.36
SIX2Q9NPC8 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SIX2Q9NPC8 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 PKD1P1-201ENST00000458669 6805 ntBASIC17.26■□□□□ 0.35
SIX2Q9NPC8 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 AC090616.6-203ENST00000579186 1945 ntBASIC17.26■□□□□ 0.35
SIX2Q9NPC8 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms