Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 SERBP1P3-201ENST00000459980 809 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 AP005018.1-201ENST00000525475 301 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 AC026691.1-201ENST00000602502 2017 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 AL365330.1-201ENST00000607459 531 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 AC004233.3-201ENST00000607794 1269 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 AC025048.6-201ENST00000634326 1161 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 CYP2T1P-202ENST00000641596 2535 ntBASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 AC005034.1-201ENST00000426657 489 ntBASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 AL139010.1-201ENST00000454878 894 ntBASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 AL512361.1-201ENST00000554200 418 ntBASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 AL035252.4-201ENST00000624174 288 ntBASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAIPQ9BWF2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 RN7SL618P-201ENST00000477850 296 ntBASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 U82695.1-201ENST00000635752 1889 ntBASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAIPQ9BWF2 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRAIPQ9BWF2 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms