Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SOX2P48431 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SOX2P48431 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SOX2P48431 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
SOX2P48431 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 LAGE3P1-201ENST00000425356 484 ntBASIC14.29□□□□□ -0.12
SOX2P48431 KRT18P31-201ENST00000506277 1292 ntBASIC14.29□□□□□ -0.12
SOX2P48431 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.29□□□□□ -0.12
SOX2P48431 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.29□□□□□ -0.12
SOX2P48431 AL121772.3-201ENST00000610840 674 ntBASIC14.29□□□□□ -0.12
SOX2P48431 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX2P48431 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX2P48431 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SOX2P48431 SSR4P1-203ENST00000599569 2260 ntBASIC14.29□□□□□ -0.12
SOX2P48431 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.28□□□□□ -0.12
SOX2P48431 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
SOX2P48431 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
SOX2P48431 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
SOX2P48431 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 AL160237.2-201ENST00000556165 472 ntBASIC14.28□□□□□ -0.12
SOX2P48431 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.28□□□□□ -0.12
SOX2P48431 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.28□□□□□ -0.12
SOX2P48431 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.28□□□□□ -0.12
SOX2P48431 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 AC012569.1-201ENST00000591191 1524 ntBASIC14.28□□□□□ -0.12
SOX2P48431 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 AC092919.2-201ENST00000623631 1645 ntBASIC14.28□□□□□ -0.12
SOX2P48431 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 PGM5P2-202ENST00000637225 1043 ntBASIC14.28□□□□□ -0.12
SOX2P48431 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX2P48431 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SOX2P48431 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SOX2P48431 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms