Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SCN4AP35499 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SCN4AP35499 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.66■□□□□ 0.58
SCN4AP35499 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.66■□□□□ 0.58
SCN4AP35499 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC18.66■□□□□ 0.58
SCN4AP35499 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.66■□□□□ 0.58
SCN4AP35499 FAM8A4P-201ENST00000435433 1213 ntBASIC18.66■□□□□ 0.58
SCN4AP35499 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC18.66■□□□□ 0.58
SCN4AP35499 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 AP003171.2-201ENST00000528208 925 ntBASIC18.66■□□□□ 0.58
SCN4AP35499 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC18.66■□□□□ 0.58
SCN4AP35499 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.66■□□□□ 0.58
SCN4AP35499 RN7SL713P-201ENST00000582127 302 ntBASIC18.66■□□□□ 0.58
SCN4AP35499 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.66■□□□□ 0.58
SCN4AP35499 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN4AP35499 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN4AP35499 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.65■□□□□ 0.58
SCN4AP35499 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
SCN4AP35499 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SCN4AP35499 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.65■□□□□ 0.58
SCN4AP35499 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.65■□□□□ 0.58
SCN4AP35499 AL627389.1-201ENST00000413508 1182 ntBASIC18.65■□□□□ 0.58
SCN4AP35499 ACTG1P2-201ENST00000415776 1125 ntBASIC18.65■□□□□ 0.58
SCN4AP35499 ACTG1P11-201ENST00000425411 1125 ntBASIC18.65■□□□□ 0.58
SCN4AP35499 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.65■□□□□ 0.58
SCN4AP35499 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC18.65■□□□□ 0.58
SCN4AP35499 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.65■□□□□ 0.58
SCN4AP35499 RN7SL48P-201ENST00000579283 293 ntBASIC18.65■□□□□ 0.58
SCN4AP35499 PPY2P-201ENST00000582808 702 ntBASIC18.65■□□□□ 0.58
SCN4AP35499 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.65■□□□□ 0.58
SCN4AP35499 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN4AP35499 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.65■□□□□ 0.58
SCN4AP35499 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SCN4AP35499 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN4AP35499 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN4AP35499 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.65■□□□□ 0.58
SCN4AP35499 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.65■□□□□ 0.58
SCN4AP35499 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN4AP35499 AC100757.4-201ENST00000626934 759 ntBASIC18.65■□□□□ 0.58
SCN4AP35499 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SCN4AP35499 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SCN4AP35499 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
SCN4AP35499 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SCN4AP35499 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.64■□□□□ 0.57
SCN4AP35499 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.64■□□□□ 0.57
SCN4AP35499 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC18.64■□□□□ 0.57
SCN4AP35499 RN7SL736P-201ENST00000613111 269 ntBASIC18.64■□□□□ 0.57
SCN4AP35499 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SCN4AP35499 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SCN4AP35499 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC18.64■□□□□ 0.57
SCN4AP35499 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms