Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.12■□□□□ 0.49
CIITAP33076 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CIITAP33076 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CIITAP33076 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CIITAP33076 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CIITAP33076 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
CIITAP33076 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 MIR661-201ENST00000384842 89 ntBASIC18.11■□□□□ 0.49
CIITAP33076 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.11■□□□□ 0.49
CIITAP33076 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.11■□□□□ 0.49
CIITAP33076 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CIITAP33076 PHKG1P2-201ENST00000457537 863 ntBASIC18.11■□□□□ 0.49
CIITAP33076 SDHAP3-202ENST00000515467 728 ntBASIC18.11■□□□□ 0.49
CIITAP33076 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.11■□□□□ 0.49
CIITAP33076 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.11■□□□□ 0.49
CIITAP33076 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.11■□□□□ 0.49
CIITAP33076 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CIITAP33076 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.11■□□□□ 0.49
CIITAP33076 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.11■□□□□ 0.49
CIITAP33076 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 AC112504.1-201ENST00000623415 1841 ntBASIC18.11■□□□□ 0.49
CIITAP33076 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 LINC02447-202ENST00000501888 2146 ntBASIC18.11■□□□□ 0.49
CIITAP33076 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.11■□□□□ 0.49
CIITAP33076 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CIITAP33076 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CIITAP33076 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 AL513523.2-202ENST00000427283 2040 ntBASIC18.1■□□□□ 0.49
CIITAP33076 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.1■□□□□ 0.49
CIITAP33076 Z97205.2-201ENST00000564697 1639 ntBASIC18.1■□□□□ 0.49
CIITAP33076 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.1■□□□□ 0.49
CIITAP33076 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.1■□□□□ 0.49
CIITAP33076 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.1■□□□□ 0.49
CIITAP33076 AC114501.2-201ENST00000439631 535 ntBASIC18.1■□□□□ 0.49
CIITAP33076 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.1■□□□□ 0.49
CIITAP33076 AC044860.1-202ENST00000559481 777 ntBASIC18.1■□□□□ 0.49
CIITAP33076 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CIITAP33076 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.1■□□□□ 0.49
CIITAP33076 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.1■□□□□ 0.49
CIITAP33076 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.09■□□□□ 0.49
CIITAP33076 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.09■□□□□ 0.49
CIITAP33076 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
CIITAP33076 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.09■□□□□ 0.49
CIITAP33076 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CIITAP33076 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.09■□□□□ 0.49
CIITAP33076 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CIITAP33076 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CIITAP33076 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.09■□□□□ 0.49
CIITAP33076 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 FAM8A3P-201ENST00000427218 844 ntBASIC18.09■□□□□ 0.49
CIITAP33076 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.09■□□□□ 0.49
CIITAP33076 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms