Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 ARSEP1-201ENST00000420443 635 ntBASIC16.61■□□□□ 0.25
TOP3BO95985 RBPMS2P1-201ENST00000437762 623 ntBASIC16.61■□□□□ 0.25
TOP3BO95985 AL512638.1-201ENST00000457493 794 ntBASIC16.61■□□□□ 0.25
TOP3BO95985 AC079140.1-201ENST00000508039 487 ntBASIC16.61■□□□□ 0.25
TOP3BO95985 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.61■□□□□ 0.25
TOP3BO95985 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.61■□□□□ 0.25
TOP3BO95985 AL512356.2-201ENST00000546955 174 ntBASIC16.61■□□□□ 0.25
TOP3BO95985 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.61■□□□□ 0.25
TOP3BO95985 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.61■□□□□ 0.25
TOP3BO95985 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 AP001059.3-201ENST00000619053 235 ntBASIC16.61■□□□□ 0.25
TOP3BO95985 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TOP3BO95985 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TOP3BO95985 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.6■□□□□ 0.25
TOP3BO95985 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TOP3BO95985 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
TOP3BO95985 AC008677.1-201ENST00000519230 1561 ntBASIC16.6■□□□□ 0.25
TOP3BO95985 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.6■□□□□ 0.25
TOP3BO95985 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.6■□□□□ 0.25
TOP3BO95985 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.6■□□□□ 0.25
TOP3BO95985 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.6■□□□□ 0.25
TOP3BO95985 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.6■□□□□ 0.25
TOP3BO95985 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 FAM185BP-201ENST00000443595 716 ntBASIC16.6■□□□□ 0.25
TOP3BO95985 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 MIR4492-201ENST00000581627 80 ntBASIC16.6■□□□□ 0.25
TOP3BO95985 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.6■□□□□ 0.25
TOP3BO95985 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.6■□□□□ 0.25
TOP3BO95985 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TOP3BO95985 REXO1L8P-201ENST00000604378 1897 ntBASIC16.6■□□□□ 0.25
TOP3BO95985 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TOP3BO95985 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TOP3BO95985 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.59■□□□□ 0.25
TOP3BO95985 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TOP3BO95985 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.59■□□□□ 0.25
TOP3BO95985 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms