Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.54■□□□□ 0.08
SEMA3DO95025 AC098859.1-201ENST00000502915 1238 ntBASIC15.54■□□□□ 0.08
SEMA3DO95025 MTDHP5-201ENST00000598980 586 ntBASIC15.54■□□□□ 0.08
SEMA3DO95025 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 AC008267.7-201ENST00000624570 1194 ntBASIC15.54■□□□□ 0.08
SEMA3DO95025 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.54■□□□□ 0.08
SEMA3DO95025 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
SEMA3DO95025 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
SEMA3DO95025 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 CDC14C-201ENST00000428251 1719 ntBASIC15.54■□□□□ 0.08
SEMA3DO95025 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.54■□□□□ 0.08
SEMA3DO95025 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
SEMA3DO95025 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
SEMA3DO95025 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
SEMA3DO95025 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
SEMA3DO95025 HAUS4P1-201ENST00000406739 1145 ntBASIC15.53■□□□□ 0.08
SEMA3DO95025 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.53■□□□□ 0.08
SEMA3DO95025 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.53■□□□□ 0.08
SEMA3DO95025 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.53■□□□□ 0.08
SEMA3DO95025 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
SEMA3DO95025 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.53■□□□□ 0.08
SEMA3DO95025 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.53■□□□□ 0.08
SEMA3DO95025 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.53■□□□□ 0.08
SEMA3DO95025 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.53■□□□□ 0.08
SEMA3DO95025 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.53■□□□□ 0.08
SEMA3DO95025 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.53■□□□□ 0.08
SEMA3DO95025 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.53■□□□□ 0.08
SEMA3DO95025 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
SEMA3DO95025 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
SEMA3DO95025 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.53■□□□□ 0.08
SEMA3DO95025 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 AC008677.1-201ENST00000519230 1561 ntBASIC15.53■□□□□ 0.08
SEMA3DO95025 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.53■□□□□ 0.08
SEMA3DO95025 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SEMA3DO95025 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
SEMA3DO95025 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SEMA3DO95025 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.52■□□□□ 0.08
SEMA3DO95025 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.52■□□□□ 0.08
SEMA3DO95025 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.52■□□□□ 0.08
SEMA3DO95025 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.52■□□□□ 0.08
SEMA3DO95025 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
SEMA3DO95025 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.52■□□□□ 0.08
SEMA3DO95025 LINC02447-202ENST00000501888 2146 ntBASIC15.52■□□□□ 0.08
SEMA3DO95025 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.52■□□□□ 0.08
SEMA3DO95025 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.52■□□□□ 0.08
SEMA3DO95025 AC007326.2-201ENST00000624224 7579 ntBASIC15.52■□□□□ 0.08
SEMA3DO95025 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.52■□□□□ 0.08
SEMA3DO95025 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.52■□□□□ 0.08
SEMA3DO95025 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.52■□□□□ 0.08
SEMA3DO95025 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.52■□□□□ 0.08
SEMA3DO95025 AL671883.3-201ENST00000603274 991 ntBASIC15.52■□□□□ 0.08
SEMA3DO95025 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SEMA3DO95025 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SEMA3DO95025 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.52■□□□□ 0.07
SEMA3DO95025 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.52■□□□□ 0.07
SEMA3DO95025 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.52■□□□□ 0.07
SEMA3DO95025 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms