Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LDB3O75112 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
LDB3O75112 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
LDB3O75112 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.21■□□□□ 0.03
LDB3O75112 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.21■□□□□ 0.03
LDB3O75112 AC092183.1-201ENST00000469884 875 ntBASIC15.21■□□□□ 0.03
LDB3O75112 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.21■□□□□ 0.03
LDB3O75112 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.21■□□□□ 0.03
LDB3O75112 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.21■□□□□ 0.03
LDB3O75112 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.21■□□□□ 0.03
LDB3O75112 Z92544.3-201ENST00000624747 417 ntBASIC15.21■□□□□ 0.03
LDB3O75112 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.21■□□□□ 0.03
LDB3O75112 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LDB3O75112 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.21■□□□□ 0.03
LDB3O75112 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.21■□□□□ 0.03
LDB3O75112 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LDB3O75112 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LDB3O75112 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LDB3O75112 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.21■□□□□ 0.02
LDB3O75112 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
LDB3O75112 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
LDB3O75112 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LDB3O75112 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LDB3O75112 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.2■□□□□ 0.02
LDB3O75112 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.2■□□□□ 0.02
LDB3O75112 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.2■□□□□ 0.02
LDB3O75112 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 MIR648-201ENST00000385046 94 ntBASIC15.2■□□□□ 0.02
LDB3O75112 HAUS4P1-201ENST00000406739 1145 ntBASIC15.2■□□□□ 0.02
LDB3O75112 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 SPDYE7P-202ENST00000420373 878 ntBASIC15.2■□□□□ 0.02
LDB3O75112 AL353705.2-201ENST00000428243 662 ntBASIC15.2■□□□□ 0.02
LDB3O75112 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.2■□□□□ 0.02
LDB3O75112 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 AC245100.5-201ENST00000452108 331 ntBASIC15.2■□□□□ 0.02
LDB3O75112 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.2■□□□□ 0.02
LDB3O75112 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 AC069262.1-201ENST00000539058 672 ntBASIC15.2■□□□□ 0.02
LDB3O75112 AL512356.2-201ENST00000546955 174 ntBASIC15.2■□□□□ 0.02
LDB3O75112 AC025678.2-201ENST00000562061 970 ntBASIC15.2■□□□□ 0.02
LDB3O75112 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.2■□□□□ 0.02
LDB3O75112 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.2■□□□□ 0.02
LDB3O75112 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LDB3O75112 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.19■□□□□ 0.02
LDB3O75112 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDB3O75112 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.19■□□□□ 0.02
LDB3O75112 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDB3O75112 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDB3O75112 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDB3O75112 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDB3O75112 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
LDB3O75112 AL603832.2-201ENST00000566195 2125 ntBASIC15.19■□□□□ 0.02
LDB3O75112 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LDB3O75112 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms