Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
MSH4O15457 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
MSH4O15457 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH4O15457 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH4O15457 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.05■□□□□ 0.48
MSH4O15457 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.05■□□□□ 0.48
MSH4O15457 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.05■□□□□ 0.48
MSH4O15457 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.05■□□□□ 0.48
MSH4O15457 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.05■□□□□ 0.48
MSH4O15457 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.05■□□□□ 0.48
MSH4O15457 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 MIR4745-201ENST00000577608 62 ntBASIC18.05■□□□□ 0.48
MSH4O15457 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.05■□□□□ 0.48
MSH4O15457 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
MSH4O15457 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 AC018892.3-201ENST00000623986 2499 ntBASIC18.05■□□□□ 0.48
MSH4O15457 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSH4O15457 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.04■□□□□ 0.48
MSH4O15457 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.04■□□□□ 0.48
MSH4O15457 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
MSH4O15457 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MSH4O15457 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.04■□□□□ 0.48
MSH4O15457 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.04■□□□□ 0.48
MSH4O15457 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.04■□□□□ 0.48
MSH4O15457 AC011477.6-201ENST00000604980 1927 ntBASIC18.04■□□□□ 0.48
MSH4O15457 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
MSH4O15457 DOC2GP-204ENST00000639052 2548 ntBASIC18.04■□□□□ 0.48
MSH4O15457 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.04■□□□□ 0.48
MSH4O15457 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.04■□□□□ 0.48
MSH4O15457 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.04■□□□□ 0.48
MSH4O15457 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.04■□□□□ 0.48
MSH4O15457 RN7SL204P-201ENST00000582831 262 ntBASIC18.04■□□□□ 0.48
MSH4O15457 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
MSH4O15457 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.04■□□□□ 0.48
MSH4O15457 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.04■□□□□ 0.48
MSH4O15457 AC026691.1-201ENST00000602502 2017 ntBASIC18.04■□□□□ 0.48
MSH4O15457 AC112504.1-201ENST00000623415 1841 ntBASIC18.04■□□□□ 0.48
MSH4O15457 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
MSH4O15457 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.04■□□□□ 0.48
MSH4O15457 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSH4O15457 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 AL513523.2-202ENST00000427283 2040 ntBASIC18.03■□□□□ 0.48
MSH4O15457 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MSH4O15457 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
MSH4O15457 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms