Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRIM38O00635 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM38O00635 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
TRIM38O00635 AC006538.1-201ENST00000567905 1585 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM38O00635 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 AC244107.1-201ENST00000442033 332 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 AL512638.1-201ENST00000457493 794 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.31■□□□□ 0.2
TRIM38O00635 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM38O00635 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.31■□□□□ 0.2
TRIM38O00635 MIR3909-201ENST00000579518 119 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 MIR4453-201ENST00000584019 89 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 AL035252.4-201ENST00000624174 288 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
TRIM38O00635 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
TRIM38O00635 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM38O00635 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM38O00635 AC131009.4-201ENST00000624048 1740 ntBASIC16.31■□□□□ 0.2
TRIM38O00635 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM38O00635 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM38O00635 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM38O00635 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM38O00635 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM38O00635 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 AC005034.1-201ENST00000426657 489 ntBASIC16.3■□□□□ 0.2
TRIM38O00635 AC092580.3-201ENST00000430932 139 ntBASIC16.3■□□□□ 0.2
TRIM38O00635 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 AC008761.3-201ENST00000624803 892 ntBASIC16.3■□□□□ 0.2
TRIM38O00635 AP001350.2-201ENST00000625104 1094 ntBASIC16.3■□□□□ 0.2
TRIM38O00635 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM38O00635 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM38O00635 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM38O00635 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms