Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
CCDC188H7C350 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC188H7C350 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 TCAF2P1-201ENST00000291129 2421 ntBASIC16.83■□□□□ 0.28
CCDC188H7C350 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
CCDC188H7C350 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC188H7C350 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.83■□□□□ 0.28
CCDC188H7C350 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC188H7C350 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.83■□□□□ 0.28
CCDC188H7C350 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC188H7C350 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC188H7C350 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
CCDC188H7C350 MIR1199-201ENST00000621445 119 ntBASIC16.83■□□□□ 0.28
CCDC188H7C350 LINC01101-201ENST00000622953 1884 ntBASIC16.83■□□□□ 0.28
CCDC188H7C350 AL645728.2-201ENST00000641974 660 ntBASIC16.83■□□□□ 0.28
CCDC188H7C350 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
CCDC188H7C350 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC188H7C350 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.82■□□□□ 0.28
CCDC188H7C350 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.82■□□□□ 0.28
CCDC188H7C350 OR7E14P-202ENST00000530490 1290 ntBASIC16.82■□□□□ 0.28
CCDC188H7C350 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC188H7C350 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC188H7C350 OR7E47P-204ENST00000575924 449 ntBASIC16.82■□□□□ 0.28
CCDC188H7C350 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC188H7C350 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 AC112693.3-201ENST00000624819 1983 ntBASIC16.82■□□□□ 0.28
CCDC188H7C350 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC188H7C350 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC188H7C350 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC188H7C350 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
CCDC188H7C350 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC188H7C350 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC188H7C350 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 TSPY19P-201ENST00000418461 509 ntBASIC16.81■□□□□ 0.28
CCDC188H7C350 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC188H7C350 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 TSPY18P-201ENST00000441642 509 ntBASIC16.81■□□□□ 0.28
CCDC188H7C350 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.81■□□□□ 0.28
CCDC188H7C350 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC188H7C350 AL031432.2-201ENST00000566714 459 ntBASIC16.81■□□□□ 0.28
CCDC188H7C350 AL928711.1-201ENST00000570165 459 ntBASIC16.81■□□□□ 0.28
CCDC188H7C350 MIR4321-201ENST00000592276 80 ntBASIC16.81■□□□□ 0.28
CCDC188H7C350 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
CCDC188H7C350 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.81■□□□□ 0.28
CCDC188H7C350 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC188H7C350 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC188H7C350 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC188H7C350 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms