Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
COL4A3BPQ9Y5P4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 AL365203.3-201ENST00000609742 2057 ntBASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.08■□□□□ 0.49
COL4A3BPQ9Y5P4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 AC093214.1-201ENST00000511688 1107 ntBASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 AC069120.2-201ENST00000524091 540 ntBASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 AC007967.4-201ENST00000614700 386 ntBASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.08■□□□□ 0.48
COL4A3BPQ9Y5P4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 AL158211.3-201ENST00000607385 239 ntBASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A3BPQ9Y5P4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 AL353705.2-201ENST00000428243 662 ntBASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A3BPQ9Y5P4 BCRP1-201ENST00000444246 691 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms