Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 KRT19P2-202ENST00000557173 1012 ntBASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMA1Q9UHB6 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
LIMA1Q9UHB6 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
LIMA1Q9UHB6 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.64■□□□□ 0.42
LIMA1Q9UHB6 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
LIMA1Q9UHB6 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
LIMA1Q9UHB6 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.64■□□□□ 0.42
LIMA1Q9UHB6 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AC018845.2-201ENST00000568326 409 ntBASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 SLC25A6P4-201ENST00000586535 553 ntBASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AC073389.1-201ENST00000595595 795 ntBASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AL161645.1-201ENST00000622716 1255 ntBASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AC099063.4-201ENST00000641099 1602 ntBASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMA1Q9UHB6 AC092127.1-201ENST00000567093 3455 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms