Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 HOMER2P2-201ENST00000451621 847 ntBASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 AP001582.1-201ENST00000525856 295 ntBASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF541Q9H0D2 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 AC060834.1-201ENST00000443027 2032 ntBASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF541Q9H0D2 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 MIR1202-201ENST00000408529 83 ntBASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 EEF1DP1-201ENST00000585891 896 ntBASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AC138627.1-207ENST00000641560 1006 ntBASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 AL121723.1-201ENST00000445194 1519 ntBASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF541Q9H0D2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 AC005332.8-201ENST00000622750 2735 ntBASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 MIR5572-201ENST00000583188 137 ntBASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 AC107373.2-201ENST00000607735 490 ntBASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 AC128714.1-201ENST00000637035 887 ntBASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 DRD5P1-201ENST00000456605 1438 ntBASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF541Q9H0D2 AL138709.1-201ENST00000614840 1693 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms