Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 AL671710.1-201ENST00000610245 2349 ntBASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCGF1Q9BSM1 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
PCGF1Q9BSM1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AL513523.2-202ENST00000427283 2040 ntBASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SPCS2P4-201ENST00000436160 681 ntBASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AC025678.2-201ENST00000562061 970 ntBASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 LINC00628-201ENST00000628516 1289 ntBASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PCGF1Q9BSM1 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PCGF1Q9BSM1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms