Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 AC005237.2-201ENST00000434368 219 ntBASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 SLC25A39P2-201ENST00000537614 270 ntBASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 AC055717.3-201ENST00000622967 595 ntBASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 AC007950.2-201ENST00000615045 2347 ntBASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC65Q8IXS2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CCDC65Q8IXS2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 AP001282.1-201ENST00000531301 1499 ntBASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 AC004461.1-201ENST00000412461 403 ntBASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 AP000344.2-201ENST00000512987 629 ntBASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC65Q8IXS2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms