Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 UPF3AP2-201ENST00000457924 1132 ntBASIC21.62■■□□□ 1.05
NPHP3Q7Z494 KRT18P43-201ENST00000469825 1281 ntBASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 ACR-203ENST00000529621 708 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 SNX1-214ENST00000625244 324 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 PP12613-201ENST00000424958 2230 ntBASIC21.62■■□□□ 1.05
NPHP3Q7Z494 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 PGGT1BP2-201ENST00000398621 1028 ntBASIC21.61■■□□□ 1.05
NPHP3Q7Z494 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 REEP1-202ENST00000453231 940 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 RPSAP36-202ENST00000494591 1261 ntBASIC21.61■■□□□ 1.05
NPHP3Q7Z494 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 NAT9-224ENST00000583757 583 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 EEF1DP1-201ENST00000585891 896 ntBASIC21.61■■□□□ 1.05
NPHP3Q7Z494 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 GPX4-206ENST00000588919 803 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 DRD5P1-201ENST00000456605 1438 ntBASIC21.61■■□□□ 1.05
NPHP3Q7Z494 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
NPHP3Q7Z494 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 FNTAP2-201ENST00000430308 634 ntBASIC21.6■■□□□ 1.05
NPHP3Q7Z494 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 HIST2H2BC-201ENST00000498492 580 ntBASIC21.6■■□□□ 1.05
NPHP3Q7Z494 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 AC104982.3-201ENST00000581995 514 ntBASIC21.6■■□□□ 1.05
NPHP3Q7Z494 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 AL121723.1-201ENST00000445194 1519 ntBASIC21.6■■□□□ 1.05
NPHP3Q7Z494 AL592424.1-201ENST00000563624 1536 ntBASIC21.6■■□□□ 1.05
NPHP3Q7Z494 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP3Q7Z494 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 CSH2-202ENST00000345366 598 ntTSL 5 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 EIF4HP1-201ENST00000453115 687 ntBASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms