Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ELK2AP-201ENST00000392510 1007 ntBASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 KLK3-211ENST00000597483 810 ntTSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 AC132938.4-201ENST00000623835 848 ntBASIC20.05■□□□□ 0.8
RC3H1Q5TC82 PPA1-206ENST00000625364 644 ntTSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 AL591846.1-201ENST00000451736 433 ntBASIC20.04■□□□□ 0.8
RC3H1Q5TC82 GAPDHP40-201ENST00000505218 1006 ntBASIC20.04■□□□□ 0.8
RC3H1Q5TC82 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 AC015910.1-201ENST00000579400 975 ntBASIC20.04■□□□□ 0.8
RC3H1Q5TC82 AC106872.11-201ENST00000605838 421 ntBASIC20.04■□□□□ 0.8
RC3H1Q5TC82 AC107373.2-201ENST00000607735 490 ntBASIC20.04■□□□□ 0.8
RC3H1Q5TC82 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 AP005019.2-201ENST00000615104 511 ntBASIC20.04■□□□□ 0.8
RC3H1Q5TC82 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.04■□□□□ 0.8
RC3H1Q5TC82 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 BCL2-203ENST00000589955 5011 ntBASIC20.03■□□□□ 0.8
RC3H1Q5TC82 AC134407.2-201ENST00000625089 1978 ntBASIC20.03■□□□□ 0.8
RC3H1Q5TC82 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 GUK1-206ENST00000366723 845 ntTSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 Z93015.1-201ENST00000451718 390 ntBASIC20.03■□□□□ 0.8
RC3H1Q5TC82 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 RNA5SP423-201ENST00000517127 109 ntBASIC20.03■□□□□ 0.8
RC3H1Q5TC82 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RC3H1Q5TC82 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 RNF216P1-203ENST00000404404 2427 ntBASIC20.02■□□□□ 0.8
RC3H1Q5TC82 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RC3H1Q5TC82 FAM197Y7-201ENST00000432892 766 ntBASIC20.02■□□□□ 0.8
RC3H1Q5TC82 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms