Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 AC112504.1-201ENST00000623415 1841 ntBASIC14.9□□□□□ -0.02
CDH11P55287 AC073347.1-201ENST00000421633 2643 ntBASIC14.9□□□□□ -0.02
CDH11P55287 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
CDH11P55287 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CDH11P55287 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH11P55287 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH11P55287 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH11P55287 MRPL20P1-201ENST00000400819 433 ntBASIC14.9□□□□□ -0.02
CDH11P55287 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH11P55287 AC004832.2-201ENST00000426397 482 ntBASIC14.9□□□□□ -0.02
CDH11P55287 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 PRSS29P-201ENST00000440800 595 ntBASIC14.9□□□□□ -0.02
CDH11P55287 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH11P55287 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH11P55287 AL691403.2-201ENST00000618460 490 ntBASIC14.9□□□□□ -0.02
CDH11P55287 AC004790.2-201ENST00000623588 572 ntBASIC14.9□□□□□ -0.02
CDH11P55287 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CDH11P55287 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH11P55287 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CDH11P55287 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH11P55287 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CDH11P55287 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH11P55287 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CDH11P55287 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 PTCHD3P3-201ENST00000403073 906 ntBASIC14.89□□□□□ -0.03
CDH11P55287 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH11P55287 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH11P55287 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
CDH11P55287 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.89□□□□□ -0.03
CDH11P55287 AC010654.1-201ENST00000615722 808 ntBASIC14.89□□□□□ -0.03
CDH11P55287 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.89□□□□□ -0.03
CDH11P55287 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH11P55287 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 AC022532.1-201ENST00000624563 1728 ntBASIC14.89□□□□□ -0.03
CDH11P55287 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH11P55287 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
CDH11P55287 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH11P55287 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDH11P55287 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH11P55287 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH11P55287 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH11P55287 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CDH11P55287 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
CDH11P55287 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDH11P55287 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.88□□□□□ -0.03
CDH11P55287 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH11P55287 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH11P55287 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH11P55287 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH11P55287 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH11P55287 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
CDH11P55287 RPSAP43-201ENST00000402237 625 ntBASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms