Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL8A1P27658 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
COL8A1P27658 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 AC026954.1-201ENST00000429771 1293 ntBASIC14.09□□□□□ -0.15
COL8A1P27658 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 AL162726.2-201ENST00000438986 1017 ntBASIC14.09□□□□□ -0.15
COL8A1P27658 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 RN7SL399P-201ENST00000471648 279 ntBASIC14.09□□□□□ -0.15
COL8A1P27658 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.09□□□□□ -0.15
COL8A1P27658 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.09□□□□□ -0.15
COL8A1P27658 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.09□□□□□ -0.15
COL8A1P27658 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
COL8A1P27658 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 MIR4706-201ENST00000582134 82 ntBASIC14.09□□□□□ -0.15
COL8A1P27658 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 AL022328.3-201ENST00000607943 679 ntBASIC14.09□□□□□ -0.15
COL8A1P27658 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.09□□□□□ -0.15
COL8A1P27658 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.09□□□□□ -0.15
COL8A1P27658 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL8A1P27658 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.09□□□□□ -0.15
COL8A1P27658 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.08□□□□□ -0.15
COL8A1P27658 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
COL8A1P27658 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.08□□□□□ -0.16
COL8A1P27658 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 AC104306.2-201ENST00000451877 341 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 EIF4HP1-201ENST00000453115 687 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.08□□□□□ -0.16
COL8A1P27658 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC14.08□□□□□ -0.16
COL8A1P27658 FTH1P14-201ENST00000482930 551 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.08□□□□□ -0.16
COL8A1P27658 MIR4722-201ENST00000578292 60 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 RN7SL602P-201ENST00000578326 324 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 AC025048.3-201ENST00000590609 569 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.08□□□□□ -0.16
COL8A1P27658 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
COL8A1P27658 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC14.08□□□□□ -0.16
COL8A1P27658 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
COL8A1P27658 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.08□□□□□ -0.16
COL8A1P27658 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL8A1P27658 AL021920.2-201ENST00000624828 1351 ntBASIC14.08□□□□□ -0.16
COL8A1P27658 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.07□□□□□ -0.16
COL8A1P27658 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL8A1P27658 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms