Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH3P22223 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
CDH3P22223 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 AL513523.2-202ENST00000427283 2040 ntBASIC15.94■□□□□ 0.14
CDH3P22223 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.94■□□□□ 0.14
CDH3P22223 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.94■□□□□ 0.14
CDH3P22223 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CDH3P22223 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
CDH3P22223 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.93■□□□□ 0.14
CDH3P22223 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 LINC01225-203ENST00000563550 1244 ntBASIC15.93■□□□□ 0.14
CDH3P22223 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
CDH3P22223 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.93■□□□□ 0.14
CDH3P22223 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.93■□□□□ 0.14
CDH3P22223 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CDH3P22223 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
CDH3P22223 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CDH3P22223 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.92■□□□□ 0.14
CDH3P22223 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CDH3P22223 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.92■□□□□ 0.14
CDH3P22223 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.92■□□□□ 0.14
CDH3P22223 RFPL4AP1-201ENST00000530883 850 ntBASIC15.92■□□□□ 0.14
CDH3P22223 SLC25A39P2-201ENST00000537614 270 ntBASIC15.92■□□□□ 0.14
CDH3P22223 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 AL138918.1-201ENST00000568306 659 ntBASIC15.92■□□□□ 0.14
CDH3P22223 AP000842.3-202ENST00000569238 1080 ntBASIC15.92■□□□□ 0.14
CDH3P22223 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.92■□□□□ 0.14
CDH3P22223 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms