Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 AC099063.4-201ENST00000641099 1602 ntBASIC15.73■□□□□ 0.11
LDLRP01130 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 TSEN15P1-201ENST00000423257 515 ntBASIC15.73■□□□□ 0.11
LDLRP01130 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.73■□□□□ 0.11
LDLRP01130 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.73■□□□□ 0.11
LDLRP01130 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.73■□□□□ 0.11
LDLRP01130 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.73■□□□□ 0.11
LDLRP01130 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.73■□□□□ 0.11
LDLRP01130 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 GGT3P-204ENST00000453783 1664 ntBASIC15.73■□□□□ 0.11
LDLRP01130 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDLRP01130 AC006449.6-201ENST00000612330 2296 ntBASIC15.73■□□□□ 0.11
LDLRP01130 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
LDLRP01130 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 AC073347.1-201ENST00000421633 2643 ntBASIC15.72■□□□□ 0.11
LDLRP01130 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.72■□□□□ 0.11
LDLRP01130 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.72■□□□□ 0.11
LDLRP01130 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 KLF4P1-201ENST00000412782 1185 ntBASIC15.72■□□□□ 0.11
LDLRP01130 AC092474.2-201ENST00000424288 719 ntBASIC15.72■□□□□ 0.11
LDLRP01130 VN2R19P-201ENST00000442399 1052 ntBASIC15.72■□□□□ 0.11
LDLRP01130 HCG4B-203ENST00000450128 991 ntBASIC15.72■□□□□ 0.11
LDLRP01130 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
LDLRP01130 MIR4751-201ENST00000578027 74 ntBASIC15.72■□□□□ 0.11
LDLRP01130 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.72■□□□□ 0.11
LDLRP01130 AC004817.3-201ENST00000602957 2129 ntBASIC15.72■□□□□ 0.11
LDLRP01130 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.72■□□□□ 0.11
LDLRP01130 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 AL136379.1-201ENST00000623471 2642 ntBASIC15.72■□□□□ 0.11
LDLRP01130 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.72■□□□□ 0.11
LDLRP01130 AP005117.1-202ENST00000581724 1908 ntBASIC15.72■□□□□ 0.11
LDLRP01130 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.72■□□□□ 0.11
LDLRP01130 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDLRP01130 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LDLRP01130 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LDLRP01130 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LDLRP01130 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms