Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.56■□□□□ 0.08
SEMA3DO95025 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.56■□□□□ 0.08
SEMA3DO95025 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.56■□□□□ 0.08
SEMA3DO95025 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.56■□□□□ 0.08
SEMA3DO95025 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.56■□□□□ 0.08
SEMA3DO95025 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SEMA3DO95025 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.56■□□□□ 0.08
SEMA3DO95025 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 TFAMP1-201ENST00000412727 736 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 AL671277.1-201ENST00000429656 993 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 MKNK2P1-201ENST00000437526 628 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 POLD2P1-201ENST00000511220 997 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.55■□□□□ 0.08
SEMA3DO95025 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.55■□□□□ 0.08
SEMA3DO95025 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.55■□□□□ 0.08
SEMA3DO95025 AL135744.1-201ENST00000565098 629 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 MIR4321-201ENST00000592276 80 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 C20orf181-201ENST00000623918 480 ntBASIC15.55■□□□□ 0.08
SEMA3DO95025 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SEMA3DO95025 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.55■□□□□ 0.08
SEMA3DO95025 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SEMA3DO95025 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
SEMA3DO95025 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 AC069224.1-201ENST00000566372 1715 ntBASIC15.54■□□□□ 0.08
SEMA3DO95025 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
SEMA3DO95025 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SEMA3DO95025 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SEMA3DO95025 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SEMA3DO95025 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SEMA3DO95025 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
SEMA3DO95025 YBX2P1-201ENST00000394192 760 ntBASIC15.54■□□□□ 0.08
SEMA3DO95025 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms