Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
NPHP4O75161 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC22.28■■□□□ 1.16
NPHP4O75161 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC22.28■■□□□ 1.16
NPHP4O75161 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 AC097359.3-201ENST00000603982 1210 ntBASIC22.28■■□□□ 1.16
NPHP4O75161 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC22.28■■□□□ 1.16
NPHP4O75161 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP4O75161 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
NPHP4O75161 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC22.27■■□□□ 1.16
NPHP4O75161 PARVG-202ENST00000415224 999 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 ACTG1P2-201ENST00000415776 1125 ntBASIC22.27■■□□□ 1.16
NPHP4O75161 ACTG1P11-201ENST00000425411 1125 ntBASIC22.27■■□□□ 1.16
NPHP4O75161 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC22.27■■□□□ 1.16
NPHP4O75161 RN7SL48P-201ENST00000579283 293 ntBASIC22.27■■□□□ 1.16
NPHP4O75161 AF254983.2-201ENST00000612331 135 ntBASIC22.27■■□□□ 1.16
NPHP4O75161 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP4O75161 AL592424.1-201ENST00000563624 1536 ntBASIC22.27■■□□□ 1.16
NPHP4O75161 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC22.27■■□□□ 1.16
NPHP4O75161 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC22.27■■□□□ 1.16
NPHP4O75161 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
NPHP4O75161 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC22.27■■□□□ 1.15
NPHP4O75161 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC22.27■■□□□ 1.15
NPHP4O75161 AC009053.2-201ENST00000563701 2365 ntBASIC22.26■■□□□ 1.15
NPHP4O75161 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP4O75161 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP4O75161 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
NPHP4O75161 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP4O75161 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 RAC2-202ENST00000401529 569 ntTSL 4 BASIC22.26■■□□□ 1.15
NPHP4O75161 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC22.26■■□□□ 1.15
NPHP4O75161 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC22.26■■□□□ 1.15
NPHP4O75161 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 AC005730.2-201ENST00000564549 1184 ntBASIC22.26■■□□□ 1.15
NPHP4O75161 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 MIR3147-201ENST00000577811 66 ntBASIC22.26■■□□□ 1.15
NPHP4O75161 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC22.26■■□□□ 1.15
NPHP4O75161 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP4O75161 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP4O75161 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP4O75161 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP4O75161 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC22.26■■□□□ 1.15
NPHP4O75161 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC22.26■■□□□ 1.15
NPHP4O75161 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC22.25■■□□□ 1.15
NPHP4O75161 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
NPHP4O75161 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC22.25■■□□□ 1.15
NPHP4O75161 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 RNU1-114P-201ENST00000365297 166 ntBASIC22.25■■□□□ 1.15
NPHP4O75161 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC22.25■■□□□ 1.15
NPHP4O75161 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 SUN1-204ENST00000403868 978 ntTSL 2 BASIC22.25■■□□□ 1.15
NPHP4O75161 AL008707.1-201ENST00000422498 534 ntBASIC22.25■■□□□ 1.15
NPHP4O75161 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC22.25■■□□□ 1.15
NPHP4O75161 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 CMC2-214ENST00000565925 640 ntTSL 5 BASIC22.25■■□□□ 1.15
NPHP4O75161 AL450472.2-201ENST00000603663 1156 ntBASIC22.25■■□□□ 1.15
NPHP4O75161 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC22.25■■□□□ 1.15
NPHP4O75161 AC244157.2-201ENST00000616239 1006 ntBASIC22.25■■□□□ 1.15
NPHP4O75161 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC22.25■■□□□ 1.15
NPHP4O75161 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
NPHP4O75161 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP4O75161 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP4O75161 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC22.24■■□□□ 1.15
NPHP4O75161 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
NPHP4O75161 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms