Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.59■□□□□ 0.09
VMP1Q96GC9 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VMP1Q96GC9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VMP1Q96GC9 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VMP1Q96GC9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
VMP1Q96GC9 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VMP1Q96GC9 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VMP1Q96GC9 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VMP1Q96GC9 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.58■□□□□ 0.09
VMP1Q96GC9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VMP1Q96GC9 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.09
VMP1Q96GC9 FAM45BP-202ENST00000592932 1624 ntBASIC15.58■□□□□ 0.09
VMP1Q96GC9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 RNU1-129P-201ENST00000384064 167 ntBASIC15.58■□□□□ 0.08
VMP1Q96GC9 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 AC109635.5-201ENST00000533593 962 ntBASIC15.58■□□□□ 0.08
VMP1Q96GC9 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 U1.21-201ENST00000580816 167 ntBASIC15.58■□□□□ 0.08
VMP1Q96GC9 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 AL009183.1-201ENST00000603760 355 ntBASIC15.58■□□□□ 0.08
VMP1Q96GC9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 AL161645.1-201ENST00000622716 1255 ntBASIC15.58■□□□□ 0.08
VMP1Q96GC9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.58■□□□□ 0.08
VMP1Q96GC9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VMP1Q96GC9 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AC006277.1-201ENST00000624348 1610 ntBASIC15.57■□□□□ 0.08
VMP1Q96GC9 LINC00895-201ENST00000629028 1637 ntBASIC15.57■□□□□ 0.08
VMP1Q96GC9 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 PMS2P4-201ENST00000412466 1052 ntBASIC15.57■□□□□ 0.08
VMP1Q96GC9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AC134684.3-201ENST00000641758 218 ntBASIC15.57■□□□□ 0.08
VMP1Q96GC9 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AL122018.1-201ENST00000446607 2310 ntBASIC15.57■□□□□ 0.08
VMP1Q96GC9 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VMP1Q96GC9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
VMP1Q96GC9 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms