Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.95■□□□□ 0.46
HPS3Q969F9 AC004461.1-201ENST00000412461 403 ntBASIC17.95■□□□□ 0.46
HPS3Q969F9 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 DNAJB3-201ENST00000446806 729 ntBASIC17.95■□□□□ 0.46
HPS3Q969F9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.95■□□□□ 0.46
HPS3Q969F9 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.95■□□□□ 0.46
HPS3Q969F9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.95■□□□□ 0.46
HPS3Q969F9 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.95■□□□□ 0.46
HPS3Q969F9 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.95■□□□□ 0.46
HPS3Q969F9 AC055717.3-201ENST00000622967 595 ntBASIC17.95■□□□□ 0.46
HPS3Q969F9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.95■□□□□ 0.46
HPS3Q969F9 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 AP005117.1-202ENST00000581724 1908 ntBASIC17.95■□□□□ 0.46
HPS3Q969F9 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HPS3Q969F9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.95■□□□□ 0.46
HPS3Q969F9 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HPS3Q969F9 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.95■□□□□ 0.46
HPS3Q969F9 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.94■□□□□ 0.46
HPS3Q969F9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 LINC00554-201ENST00000564841 3011 ntBASIC17.94■□□□□ 0.46
HPS3Q969F9 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.94■□□□□ 0.46
HPS3Q969F9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 HAUS4P1-201ENST00000406739 1145 ntBASIC17.94■□□□□ 0.46
HPS3Q969F9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
HPS3Q969F9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.94■□□□□ 0.46
HPS3Q969F9 IGHV3-62-201ENST00000520057 340 ntBASIC17.94■□□□□ 0.46
HPS3Q969F9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 AL513210.1-201ENST00000629608 234 ntBASIC17.94■□□□□ 0.46
HPS3Q969F9 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HPS3Q969F9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HPS3Q969F9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.94■□□□□ 0.46
HPS3Q969F9 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
HPS3Q969F9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.93■□□□□ 0.46
HPS3Q969F9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.93■□□□□ 0.46
HPS3Q969F9 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
HPS3Q969F9 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.93■□□□□ 0.46
HPS3Q969F9 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 AL365330.1-201ENST00000607459 531 ntBASIC17.93■□□□□ 0.46
HPS3Q969F9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HPS3Q969F9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.93■□□□□ 0.46
HPS3Q969F9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HPS3Q969F9 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HPS3Q969F9 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.92■□□□□ 0.46
HPS3Q969F9 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms