Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 AC092384.3-202ENST00000564646 2873 ntBASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 IGHV3-22-201ENST00000520721 359 ntBASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SLC25A6P4-201ENST00000586535 553 ntBASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.61■□□□□ 0.09
CLHC1Q8NHS4 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 KRT126P-201ENST00000549467 1181 ntBASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AC018845.2-201ENST00000568326 409 ntBASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 MIR3909-201ENST00000579518 119 ntBASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 AC073347.1-201ENST00000421633 2643 ntBASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.6■□□□□ 0.09
CLHC1Q8NHS4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLHC1Q8NHS4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms