Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC099791.1-201ENST00000416440 715 ntBASIC10.06□□□□□ -0.8
LINC00643Q86TS7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 MIR4449-201ENST00000578365 66 ntBASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 AP001972.5-201ENST00000624624 2338 ntBASIC10.06□□□□□ -0.8
LINC00643Q86TS7 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 MYCLP1-201ENST00000372451 1075 ntBASIC10.05□□□□□ -0.8
LINC00643Q86TS7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 NTF6A-201ENST00000591175 560 ntBASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 AC126365.1-201ENST00000578585 1514 ntBASIC10.05□□□□□ -0.8
LINC00643Q86TS7 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 USO1-201ENST00000264904 4135 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 AC105250.1-201ENST00000509378 2057 ntBASIC10.05□□□□□ -0.8
LINC00643Q86TS7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
LINC00643Q86TS7 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms