Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CL1P78423 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CL1P78423 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CL1P78423 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CL1P78423 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 AL161645.1-201ENST00000622716 1255 ntBASIC13.12□□□□□ -0.31
CX3CL1P78423 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CL1P78423 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.12□□□□□ -0.31
CX3CL1P78423 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CL1P78423 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CL1P78423 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.11□□□□□ -0.31
CX3CL1P78423 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CX3CL1P78423 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CX3CL1P78423 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.11□□□□□ -0.31
CX3CL1P78423 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 MCCD1P2-201ENST00000423228 335 ntBASIC13.11□□□□□ -0.31
CX3CL1P78423 AC004832.2-201ENST00000426397 482 ntBASIC13.11□□□□□ -0.31
CX3CL1P78423 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.11□□□□□ -0.31
CX3CL1P78423 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.11□□□□□ -0.31
CX3CL1P78423 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CX3CL1P78423 KRT18P34-201ENST00000488218 1270 ntBASIC13.11□□□□□ -0.31
CX3CL1P78423 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.11□□□□□ -0.31
CX3CL1P78423 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CX3CL1P78423 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CX3CL1P78423 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CX3CL1P78423 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.11□□□□□ -0.31
CX3CL1P78423 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.11□□□□□ -0.31
CX3CL1P78423 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.11□□□□□ -0.31
CX3CL1P78423 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.11□□□□□ -0.31
CX3CL1P78423 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CX3CL1P78423 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.11□□□□□ -0.31
CX3CL1P78423 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CX3CL1P78423 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.1□□□□□ -0.31
CX3CL1P78423 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CX3CL1P78423 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.1□□□□□ -0.31
CX3CL1P78423 DBET-201ENST00000630918 3363 ntBASIC13.1□□□□□ -0.31
CX3CL1P78423 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.1□□□□□ -0.31
CX3CL1P78423 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CX3CL1P78423 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms