Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15□□□□□ -0.01
RNF4P78317 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15□□□□□ -0.01
RNF4P78317 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
RNF4P78317 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15□□□□□ -0.01
RNF4P78317 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15□□□□□ -0.01
RNF4P78317 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
RNF4P78317 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15□□□□□ -0.01
RNF4P78317 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
RNF4P78317 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.99□□□□□ -0.01
RNF4P78317 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.99□□□□□ -0.01
RNF4P78317 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 MIR770-201ENST00000390219 98 ntBASIC14.99□□□□□ -0.01
RNF4P78317 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.99□□□□□ -0.01
RNF4P78317 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.99□□□□□ -0.01
RNF4P78317 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.99□□□□□ -0.01
RNF4P78317 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.99□□□□□ -0.01
RNF4P78317 AC097493.3-201ENST00000509725 367 ntBASIC14.99□□□□□ -0.01
RNF4P78317 IGHV3-42-201ENST00000520410 361 ntBASIC14.99□□□□□ -0.01
RNF4P78317 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.99□□□□□ -0.01
RNF4P78317 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.99□□□□□ -0.01
RNF4P78317 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.99□□□□□ -0.01
RNF4P78317 AC005498.2-205ENST00000593218 784 ntBASIC14.99□□□□□ -0.01
RNF4P78317 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
RNF4P78317 AL133215.2-201ENST00000609242 977 ntBASIC14.99□□□□□ -0.01
RNF4P78317 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.99□□□□□ -0.01
RNF4P78317 AC073592.8-201ENST00000624126 511 ntBASIC14.99□□□□□ -0.01
RNF4P78317 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.99□□□□□ -0.01
RNF4P78317 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
RNF4P78317 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.99□□□□□ -0.01
RNF4P78317 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.98□□□□□ -0.01
RNF4P78317 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
RNF4P78317 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.98□□□□□ -0.01
RNF4P78317 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.98□□□□□ -0.01
RNF4P78317 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.98□□□□□ -0.01
RNF4P78317 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.98□□□□□ -0.01
RNF4P78317 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.98□□□□□ -0.01
RNF4P78317 AL390955.2-201ENST00000603032 514 ntBASIC14.98□□□□□ -0.01
RNF4P78317 AL589739.1-201ENST00000607720 493 ntBASIC14.98□□□□□ -0.01
RNF4P78317 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.98□□□□□ -0.01
RNF4P78317 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 CETN4P-206ENST00000642099 2168 ntBASIC14.98□□□□□ -0.01
RNF4P78317 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
RNF4P78317 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNF4P78317 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.98□□□□□ -0.01
RNF4P78317 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNF4P78317 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
RNF4P78317 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms