Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NEK3P51956 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
NEK3P51956 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 GGT4P-201ENST00000623672 1708 ntBASIC16.74■□□□□ 0.27
NEK3P51956 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.74■□□□□ 0.27
NEK3P51956 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.74■□□□□ 0.27
NEK3P51956 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 HLA-J-203ENST00000494367 1087 ntBASIC16.74■□□□□ 0.27
NEK3P51956 RFPL4AP1-201ENST00000530883 850 ntBASIC16.74■□□□□ 0.27
NEK3P51956 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
NEK3P51956 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.74■□□□□ 0.27
NEK3P51956 KRT8P23-201ENST00000560090 1207 ntBASIC16.74■□□□□ 0.27
NEK3P51956 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.74■□□□□ 0.27
NEK3P51956 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.74■□□□□ 0.27
NEK3P51956 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
NEK3P51956 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
NEK3P51956 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.74■□□□□ 0.27
NEK3P51956 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NEK3P51956 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.73■□□□□ 0.27
NEK3P51956 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
NEK3P51956 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 AC010491.1-201ENST00000563101 2797 ntBASIC16.73■□□□□ 0.27
NEK3P51956 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
NEK3P51956 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
NEK3P51956 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.73■□□□□ 0.27
NEK3P51956 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
NEK3P51956 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.73■□□□□ 0.27
NEK3P51956 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
NEK3P51956 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.73■□□□□ 0.27
NEK3P51956 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 AC025678.2-201ENST00000562061 970 ntBASIC16.73■□□□□ 0.27
NEK3P51956 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.73■□□□□ 0.27
NEK3P51956 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
NEK3P51956 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.73■□□□□ 0.27
NEK3P51956 LINC00628-201ENST00000628516 1289 ntBASIC16.73■□□□□ 0.27
NEK3P51956 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
NEK3P51956 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
NEK3P51956 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.73■□□□□ 0.27
NEK3P51956 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.73■□□□□ 0.27
NEK3P51956 AL671710.1-201ENST00000610245 2349 ntBASIC16.73■□□□□ 0.27
NEK3P51956 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
NEK3P51956 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
NEK3P51956 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.72■□□□□ 0.27
NEK3P51956 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.72■□□□□ 0.27
NEK3P51956 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
NEK3P51956 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NEK3P51956 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
NEK3P51956 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms