Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TOP3BP1-201ENST00000420768 1380 ntBASIC16.37■□□□□ 0.21
TRIM38O00635 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM38O00635 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM38O00635 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.36■□□□□ 0.21
TRIM38O00635 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
TRIM38O00635 MTHFR-217ENST00000641820 1569 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.36■□□□□ 0.21
TRIM38O00635 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.36■□□□□ 0.21
TRIM38O00635 IGHV3-42-201ENST00000520410 361 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.36■□□□□ 0.21
TRIM38O00635 ALG1L8P-201ENST00000533887 760 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.36■□□□□ 0.21
TRIM38O00635 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM38O00635 AP000842.3-202ENST00000569238 1080 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 AC091167.2-201ENST00000579581 588 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 AC027307.2-201ENST00000591252 911 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 MIR6080-201ENST00000617359 66 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 AC008267.7-201ENST00000624570 1194 ntBASIC16.36■□□□□ 0.21
TRIM38O00635 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
TRIM38O00635 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
TRIM38O00635 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM38O00635 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 FRMD8P1-201ENST00000440433 1524 ntBASIC16.35■□□□□ 0.21
TRIM38O00635 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 ALOX12P2-203ENST00000570921 1945 ntBASIC16.35■□□□□ 0.21
TRIM38O00635 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.35■□□□□ 0.21
TRIM38O00635 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.35■□□□□ 0.21
TRIM38O00635 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 TERF1P3-201ENST00000505638 1227 ntBASIC16.35■□□□□ 0.21
TRIM38O00635 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.35■□□□□ 0.21
TRIM38O00635 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM38O00635 AC087641.1-201ENST00000557561 1021 ntBASIC16.35■□□□□ 0.21
TRIM38O00635 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM38O00635 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TRIM38O00635 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
TRIM38O00635 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM38O00635 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM38O00635 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM38O00635 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM38O00635 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM38O00635 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 AC016027.1-202ENST00000607927 1699 ntBASIC16.34■□□□□ 0.21
TRIM38O00635 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 MIR346-201ENST00000362234 95 ntBASIC16.34■□□□□ 0.21
TRIM38O00635 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM38O00635 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms