Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HLA-DRB4X5D2U9 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 AC018755.3-202ENST00000596210 929 ntBASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HLA-DRB4X5D2U9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
HLA-DRB4X5D2U9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HLA-DRB4X5D2U9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HLA-DRB4X5D2U9 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 NTF6A-201ENST00000591175 560 ntBASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HLA-DRB4X5D2U9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DRB4X5D2U9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DRB4X5D2U9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HLA-DRB4X5D2U9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DRB4X5D2U9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC17.62■□□□□ 0.41
HLA-DRB4X5D2U9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 KRT18P60-201ENST00000312876 1297 ntBASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 SPCS2P3-201ENST00000500401 656 ntBASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 MIR6765-201ENST00000614092 87 ntBASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DRB4X5D2U9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 DUX4L9-201ENST00000449051 1259 ntBASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 AC129492.7-201ENST00000622992 756 ntBASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DRB4X5D2U9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DRB4X5D2U9 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DRB4X5D2U9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DRB4X5D2U9 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DRB4X5D2U9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DRB4X5D2U9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 RPS2P7-201ENST00000447334 885 ntBASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DRB4X5D2U9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DRB4X5D2U9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HLA-DRB4X5D2U9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DRB4X5D2U9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DRB4X5D2U9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DRB4X5D2U9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DRB4X5D2U9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
HLA-DRB4X5D2U9 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DRB4X5D2U9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DRB4X5D2U9 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.55■□□□□ 0.4
HLA-DRB4X5D2U9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DRB4X5D2U9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DRB4X5D2U9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms