Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 MIR4787-201ENST00000607364 84 ntBASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 AC021242.3-201ENST00000607598 1377 ntBASIC25.89■■□□□ 1.74
TRAIPQ9BWF2 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
TRAIPQ9BWF2 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
TRAIPQ9BWF2 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 AC131212.1-201ENST00000613771 668 ntBASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRAIPQ9BWF2 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
TRAIPQ9BWF2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
TRAIPQ9BWF2 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.87■■□□□ 1.73
TRAIPQ9BWF2 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
TRAIPQ9BWF2 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TRAIPQ9BWF2 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
TRAIPQ9BWF2 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRAIPQ9BWF2 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
TRAIPQ9BWF2 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC25.86■■□□□ 1.73
TRAIPQ9BWF2 AC011551.1-201ENST00000614101 683 ntBASIC25.86■■□□□ 1.73
TRAIPQ9BWF2 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRAIPQ9BWF2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TRAIPQ9BWF2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
TRAIPQ9BWF2 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.85■■□□□ 1.73
TRAIPQ9BWF2 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.85■■□□□ 1.73
TRAIPQ9BWF2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
TRAIPQ9BWF2 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 MIR4281-201ENST00000580852 62 ntBASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TRAIPQ9BWF2 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.83■■□□□ 1.73
TRAIPQ9BWF2 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
TRAIPQ9BWF2 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.72
TRAIPQ9BWF2 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.82■■□□□ 1.72
TRAIPQ9BWF2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.82■■□□□ 1.72
TRAIPQ9BWF2 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TRAIPQ9BWF2 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TRAIPQ9BWF2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
TRAIPQ9BWF2 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
TRAIPQ9BWF2 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
TRAIPQ9BWF2 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 UNC93B8-201ENST00000511903 705 ntBASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
TRAIPQ9BWF2 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 AC091060.1-201ENST00000623524 1766 ntBASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
TRAIPQ9BWF2 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
TRAIPQ9BWF2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TRAIPQ9BWF2 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TRAIPQ9BWF2 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.77■■□□□ 1.72
TRAIPQ9BWF2 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TRAIPQ9BWF2 AC092028.1-203ENST00000608262 953 ntBASIC25.76■■□□□ 1.71
TRAIPQ9BWF2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TRAIPQ9BWF2 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.76■■□□□ 1.71
TRAIPQ9BWF2 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms