Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 MIR6724-1-201ENST00000616420 92 ntBASIC23.85■■□□□ 1.41
HMGB4Q8WW32 MIR6724-2-201ENST00000616483 92 ntBASIC23.85■■□□□ 1.41
HMGB4Q8WW32 MIR6724-4-201ENST00000617390 92 ntBASIC23.85■■□□□ 1.41
HMGB4Q8WW32 MIR6724-3-201ENST00000622482 92 ntBASIC23.85■■□□□ 1.41
HMGB4Q8WW32 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
HMGB4Q8WW32 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 AL139246.5-201ENST00000606645 996 ntBASIC23.84■■□□□ 1.41
HMGB4Q8WW32 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.84■■□□□ 1.41
HMGB4Q8WW32 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HMGB4Q8WW32 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
HMGB4Q8WW32 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 MIR3621-201ENST00000580529 85 ntBASIC23.82■■□□□ 1.4
HMGB4Q8WW32 AL356740.2-201ENST00000601559 647 ntBASIC23.82■■□□□ 1.4
HMGB4Q8WW32 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB4Q8WW32 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGB4Q8WW32 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
HMGB4Q8WW32 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.81■■□□□ 1.4
HMGB4Q8WW32 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.81■■□□□ 1.4
HMGB4Q8WW32 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
HMGB4Q8WW32 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB4Q8WW32 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB4Q8WW32 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.78■■□□□ 1.4
HMGB4Q8WW32 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB4Q8WW32 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.78■■□□□ 1.4
HMGB4Q8WW32 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.78■■□□□ 1.4
HMGB4Q8WW32 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.78■■□□□ 1.4
HMGB4Q8WW32 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB4Q8WW32 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.78■■□□□ 1.4
HMGB4Q8WW32 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB4Q8WW32 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB4Q8WW32 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.76■■□□□ 1.39
HMGB4Q8WW32 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
HMGB4Q8WW32 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB4Q8WW32 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HMGB4Q8WW32 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB4Q8WW32 FOXO3B-201ENST00000395675 1928 ntBASIC23.75■■□□□ 1.39
HMGB4Q8WW32 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
HMGB4Q8WW32 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB4Q8WW32 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
HMGB4Q8WW32 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.74■■□□□ 1.39
HMGB4Q8WW32 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HMGB4Q8WW32 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.74■■□□□ 1.39
HMGB4Q8WW32 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
HMGB4Q8WW32 AF131216.4-201ENST00000638924 1588 ntBASIC23.74■■□□□ 1.39
HMGB4Q8WW32 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB4Q8WW32 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.73■■□□□ 1.39
HMGB4Q8WW32 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB4Q8WW32 MIR4466-201ENST00000606121 54 ntBASIC23.73■■□□□ 1.39
HMGB4Q8WW32 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.73■■□□□ 1.39
HMGB4Q8WW32 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HMGB4Q8WW32 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGB4Q8WW32 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms