Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SMC1BQ8NDV3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
SMC1BQ8NDV3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SMC1BQ8NDV3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
SMC1BQ8NDV3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SMC1BQ8NDV3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.48■■■□□ 2.15
SMC1BQ8NDV3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC28.48■■■□□ 2.15
SMC1BQ8NDV3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
SMC1BQ8NDV3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC28.48■■■□□ 2.15
SMC1BQ8NDV3 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 DUX4L19-201ENST00000557448 1267 ntBASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 RASA4CP-201ENST00000424092 1398 ntBASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
SMC1BQ8NDV3 IRS3P-201ENST00000223076 1006 ntBASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC28.46■■■□□ 2.15
SMC1BQ8NDV3 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SMC1BQ8NDV3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC28.45■■■□□ 2.14
SMC1BQ8NDV3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.45■■■□□ 2.14
SMC1BQ8NDV3 ABCB10P3-201ENST00000561950 2166 ntBASIC28.45■■■□□ 2.14
SMC1BQ8NDV3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SMC1BQ8NDV3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
SMC1BQ8NDV3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.44■■■□□ 2.14
SMC1BQ8NDV3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.44■■■□□ 2.14
SMC1BQ8NDV3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC28.44■■■□□ 2.14
SMC1BQ8NDV3 SF1-220ENST00000626028 704 ntTSL 2 BASIC28.44■■■□□ 2.14
SMC1BQ8NDV3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC28.44■■■□□ 2.14
SMC1BQ8NDV3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SMC1BQ8NDV3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.43■■■□□ 2.14
SMC1BQ8NDV3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SMC1BQ8NDV3 MAG-206ENST00000597035 542 ntTSL 4 BASIC28.43■■■□□ 2.14
SMC1BQ8NDV3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC28.43■■■□□ 2.14
SMC1BQ8NDV3 MIR6722-201ENST00000617286 78 ntBASIC28.42■■■□□ 2.14
SMC1BQ8NDV3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC28.42■■■□□ 2.14
SMC1BQ8NDV3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 AF131216.4-201ENST00000638924 1588 ntBASIC28.41■■■□□ 2.14
SMC1BQ8NDV3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SMC1BQ8NDV3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SMC1BQ8NDV3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.39■■■□□ 2.14
SMC1BQ8NDV3 AC034268.1-201ENST00000441047 882 ntBASIC28.39■■■□□ 2.14
SMC1BQ8NDV3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
SMC1BQ8NDV3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.39■■■□□ 2.13
SMC1BQ8NDV3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SMC1BQ8NDV3 SLC47A1P1-202ENST00000449666 945 ntBASIC28.38■■■□□ 2.13
SMC1BQ8NDV3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.38■■■□□ 2.13
SMC1BQ8NDV3 MIR4767-201ENST00000582827 78 ntBASIC28.38■■■□□ 2.13
SMC1BQ8NDV3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SMC1BQ8NDV3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
SMC1BQ8NDV3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC28.36■■■□□ 2.13
SMC1BQ8NDV3 ST7-AS1-201ENST00000456775 1889 ntBASIC28.36■■■□□ 2.13
SMC1BQ8NDV3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
SMC1BQ8NDV3 AC027682.1-201ENST00000562846 899 ntBASIC28.36■■■□□ 2.13
SMC1BQ8NDV3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SMC1BQ8NDV3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.35■■■□□ 2.13
SMC1BQ8NDV3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SMC1BQ8NDV3 AC092437.1-201ENST00000624794 1048 ntBASIC28.35■■■□□ 2.13
SMC1BQ8NDV3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SMC1BQ8NDV3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SMC1BQ8NDV3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SMC1BQ8NDV3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
SMC1BQ8NDV3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SMC1BQ8NDV3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SMC1BQ8NDV3 ESRRAP2-201ENST00000418437 1549 ntBASIC28.33■■■□□ 2.13
SMC1BQ8NDV3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.32■■■□□ 2.12
SMC1BQ8NDV3 SNX5-217ENST00000606557 1087 ntBASIC28.32■■■□□ 2.12
SMC1BQ8NDV3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SMC1BQ8NDV3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SMC1BQ8NDV3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC28.31■■■□□ 2.12
SMC1BQ8NDV3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.31■■■□□ 2.12
SMC1BQ8NDV3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
SMC1BQ8NDV3 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.31■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms