Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
USP54Q70EL1 LSM4-201ENST00000252816 986 ntTSL 2 BASIC32.09■■■□□ 2.73
USP54Q70EL1 SNX5-217ENST00000606557 1087 ntBASIC32.09■■■□□ 2.73
USP54Q70EL1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP54Q70EL1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC32.09■■■□□ 2.73
USP54Q70EL1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP54Q70EL1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
USP54Q70EL1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC32.08■■■□□ 2.73
USP54Q70EL1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC32.08■■■□□ 2.73
USP54Q70EL1 MIR3621-201ENST00000580529 85 ntBASIC32.08■■■□□ 2.73
USP54Q70EL1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
USP54Q70EL1 AC096887.2-201ENST00000623443 1957 ntBASIC32.08■■■□□ 2.73
USP54Q70EL1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
USP54Q70EL1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC32.08■■■□□ 2.73
USP54Q70EL1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC32.08■■■□□ 2.73
USP54Q70EL1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP54Q70EL1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP54Q70EL1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP54Q70EL1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP54Q70EL1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
USP54Q70EL1 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC32.06■■■□□ 2.72
USP54Q70EL1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC32.06■■■□□ 2.72
USP54Q70EL1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC32.06■■■□□ 2.72
USP54Q70EL1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC32.06■■■□□ 2.72
USP54Q70EL1 SRR-208ENST00000576848 588 ntTSL 4 BASIC32.06■■■□□ 2.72
USP54Q70EL1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
USP54Q70EL1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
USP54Q70EL1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC32.06■■■□□ 2.72
USP54Q70EL1 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
USP54Q70EL1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC32.06■■■□□ 2.72
USP54Q70EL1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC32.06■■■□□ 2.72
USP54Q70EL1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
USP54Q70EL1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC32.05■■■□□ 2.72
USP54Q70EL1 AC010997.5-201ENST00000609182 354 ntBASIC32.05■■■□□ 2.72
USP54Q70EL1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
USP54Q70EL1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC32.05■■■□□ 2.72
USP54Q70EL1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC32.05■■■□□ 2.72
USP54Q70EL1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC32.05■■■□□ 2.72
USP54Q70EL1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC32.05■■■□□ 2.72
USP54Q70EL1 MIR4466-201ENST00000606121 54 ntBASIC32.05■■■□□ 2.72
USP54Q70EL1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
USP54Q70EL1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC32.04■■■□□ 2.72
USP54Q70EL1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP54Q70EL1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC32.04■■■□□ 2.72
USP54Q70EL1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC32.04■■■□□ 2.72
USP54Q70EL1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP54Q70EL1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP54Q70EL1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC32.03■■■□□ 2.72
USP54Q70EL1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
USP54Q70EL1 FOXO3B-201ENST00000395675 1928 ntBASIC32.02■■■□□ 2.72
USP54Q70EL1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC32.02■■■□□ 2.72
USP54Q70EL1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC32.02■■■□□ 2.72
USP54Q70EL1 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC32.02■■■□□ 2.72
USP54Q70EL1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC32.02■■■□□ 2.72
USP54Q70EL1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
USP54Q70EL1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC32.01■■■□□ 2.72
USP54Q70EL1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC32.01■■■□□ 2.71
USP54Q70EL1 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC32.01■■■□□ 2.71
USP54Q70EL1 AC110285.6-201ENST00000617652 491 ntBASIC32.01■■■□□ 2.71
USP54Q70EL1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
USP54Q70EL1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
USP54Q70EL1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.71
USP54Q70EL1 RASSF1-AS1-201ENST00000629828 790 ntBASIC32■■■□□ 2.71
USP54Q70EL1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC32■■■□□ 2.71
USP54Q70EL1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
USP54Q70EL1 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
USP54Q70EL1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.99■■■□□ 2.71
USP54Q70EL1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
USP54Q70EL1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC31.99■■■□□ 2.71
USP54Q70EL1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.98■■■□□ 2.71
USP54Q70EL1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP54Q70EL1 CD72-202ENST00000378430 585 ntTSL 3 BASIC31.97■■■□□ 2.71
USP54Q70EL1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
USP54Q70EL1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC31.97■■■□□ 2.71
USP54Q70EL1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP54Q70EL1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.97■■■□□ 2.71
USP54Q70EL1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
USP54Q70EL1 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
USP54Q70EL1 AL136116.3-201ENST00000402907 1138 ntBASIC31.96■■■□□ 2.71
USP54Q70EL1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
USP54Q70EL1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC31.95■■■□□ 2.71
USP54Q70EL1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.95■■■□□ 2.71
USP54Q70EL1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP54Q70EL1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC31.95■■■□□ 2.7
USP54Q70EL1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.95■■■□□ 2.7
USP54Q70EL1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
USP54Q70EL1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC31.94■■■□□ 2.7
USP54Q70EL1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.94■■■□□ 2.7
USP54Q70EL1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
USP54Q70EL1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC31.93■■■□□ 2.7
USP54Q70EL1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP54Q70EL1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
USP54Q70EL1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP54Q70EL1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
USP54Q70EL1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP54Q70EL1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.92■■■□□ 2.7
USP54Q70EL1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USP54Q70EL1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
USP54Q70EL1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USP54Q70EL1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC31.92■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms