Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 DUX4L12-201ENST00000614593 1267 ntBASIC20.95■□□□□ 0.94
CCDC58Q4VC31 DUX4L14-201ENST00000621227 1267 ntBASIC20.95■□□□□ 0.94
CCDC58Q4VC31 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC58Q4VC31 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC58Q4VC31 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 HLA-V-202ENST00000446817 847 ntBASIC20.94■□□□□ 0.94
CCDC58Q4VC31 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC58Q4VC31 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 AC126177.7-201ENST00000547904 679 ntBASIC20.93■□□□□ 0.94
CCDC58Q4VC31 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC58Q4VC31 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC58Q4VC31 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC58Q4VC31 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC58Q4VC31 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC58Q4VC31 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC58Q4VC31 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC58Q4VC31 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC58Q4VC31 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC58Q4VC31 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC58Q4VC31 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC58Q4VC31 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC58Q4VC31 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC58Q4VC31 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC58Q4VC31 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC58Q4VC31 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC58Q4VC31 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC58Q4VC31 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC58Q4VC31 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.89■□□□□ 0.94
CCDC58Q4VC31 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC58Q4VC31 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC58Q4VC31 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC58Q4VC31 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC58Q4VC31 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC58Q4VC31 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC58Q4VC31 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC58Q4VC31 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC58Q4VC31 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC58Q4VC31 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms