Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA3P55318 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA3P55318 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA3P55318 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
FOXA3P55318 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
FOXA3P55318 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC17.59■□□□□ 0.41
FOXA3P55318 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.59■□□□□ 0.41
FOXA3P55318 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.59■□□□□ 0.41
FOXA3P55318 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC17.59■□□□□ 0.41
FOXA3P55318 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA3P55318 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC17.58■□□□□ 0.41
FOXA3P55318 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
FOXA3P55318 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA3P55318 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
FOXA3P55318 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
FOXA3P55318 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXA3P55318 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA3P55318 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA3P55318 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA3P55318 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA3P55318 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXA3P55318 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA3P55318 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXA3P55318 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA3P55318 HNRNPLP2-201ENST00000568980 1570 ntBASIC17.57■□□□□ 0.4
FOXA3P55318 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXA3P55318 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
FOXA3P55318 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
FOXA3P55318 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 SUZ12P1-203ENST00000578195 985 ntBASIC17.57■□□□□ 0.4
FOXA3P55318 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
FOXA3P55318 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
FOXA3P55318 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXA3P55318 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
FOXA3P55318 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA3P55318 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXA3P55318 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXA3P55318 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXA3P55318 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA3P55318 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.55■□□□□ 0.4
FOXA3P55318 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA3P55318 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXA3P55318 AC004812.2-201ENST00000611079 2094 ntBASIC17.55■□□□□ 0.4
FOXA3P55318 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA3P55318 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA3P55318 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA3P55318 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
FOXA3P55318 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
FOXA3P55318 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXA3P55318 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXA3P55318 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXA3P55318 C9orf163-202ENST00000624034 2573 ntBASIC17.54■□□□□ 0.4
FOXA3P55318 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA3P55318 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
FOXA3P55318 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
FOXA3P55318 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA3P55318 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
FOXA3P55318 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA3P55318 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA3P55318 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA3P55318 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA3P55318 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA3P55318 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA3P55318 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.52■□□□□ 0.4
FOXA3P55318 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
FOXA3P55318 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXA3P55318 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms