Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM4P50479 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM4P50479 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM4P50479 KRT16P3-201ENST00000439127 1283 ntBASIC20■□□□□ 0.79
PDLIM4P50479 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20■□□□□ 0.79
PDLIM4P50479 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20■□□□□ 0.79
PDLIM4P50479 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM4P50479 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20■□□□□ 0.79
PDLIM4P50479 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDLIM4P50479 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM4P50479 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM4P50479 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PDLIM4P50479 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.99■□□□□ 0.79
PDLIM4P50479 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM4P50479 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM4P50479 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM4P50479 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
PDLIM4P50479 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
PDLIM4P50479 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.98■□□□□ 0.79
PDLIM4P50479 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM4P50479 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.98■□□□□ 0.79
PDLIM4P50479 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
PDLIM4P50479 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM4P50479 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
PDLIM4P50479 AC008406.3-201ENST00000620001 1374 ntBASIC19.97■□□□□ 0.79
PDLIM4P50479 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM4P50479 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM4P50479 TSPY9P-201ENST00000440215 945 ntBASIC19.97■□□□□ 0.79
PDLIM4P50479 TSPY11P-201ENST00000442607 1045 ntBASIC19.97■□□□□ 0.79
PDLIM4P50479 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM4P50479 UNC93B8-201ENST00000511903 705 ntBASIC19.97■□□□□ 0.79
PDLIM4P50479 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM4P50479 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM4P50479 AC021242.3-201ENST00000607598 1377 ntBASIC19.96■□□□□ 0.79
PDLIM4P50479 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.96■□□□□ 0.79
PDLIM4P50479 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM4P50479 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.96■□□□□ 0.79
PDLIM4P50479 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM4P50479 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM4P50479 MIR4281-201ENST00000580852 62 ntBASIC19.96■□□□□ 0.79
PDLIM4P50479 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM4P50479 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM4P50479 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.96■□□□□ 0.79
PDLIM4P50479 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM4P50479 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM4P50479 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM4P50479 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM4P50479 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM4P50479 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM4P50479 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.95■□□□□ 0.78
PDLIM4P50479 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM4P50479 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM4P50479 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM4P50479 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
PDLIM4P50479 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM4P50479 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.94■□□□□ 0.78
PDLIM4P50479 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.94■□□□□ 0.78
PDLIM4P50479 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM4P50479 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.94■□□□□ 0.78
PDLIM4P50479 AC011551.1-201ENST00000614101 683 ntBASIC19.94■□□□□ 0.78
PDLIM4P50479 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PDLIM4P50479 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM4P50479 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM4P50479 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM4P50479 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.93■□□□□ 0.78
PDLIM4P50479 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM4P50479 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PDLIM4P50479 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.93■□□□□ 0.78
PDLIM4P50479 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.92■□□□□ 0.78
PDLIM4P50479 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.92■□□□□ 0.78
PDLIM4P50479 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.92■□□□□ 0.78
PDLIM4P50479 AC092028.1-203ENST00000608262 953 ntBASIC19.92■□□□□ 0.78
PDLIM4P50479 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.92■□□□□ 0.78
PDLIM4P50479 AC019069.1-201ENST00000610008 1333 ntBASIC19.92■□□□□ 0.78
PDLIM4P50479 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PDLIM4P50479 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.91■□□□□ 0.78
PDLIM4P50479 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.91■□□□□ 0.78
PDLIM4P50479 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PDLIM4P50479 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
PDLIM4P50479 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.9■□□□□ 0.78
PDLIM4P50479 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.9■□□□□ 0.78
PDLIM4P50479 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.9■□□□□ 0.78
PDLIM4P50479 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM4P50479 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.9■□□□□ 0.78
PDLIM4P50479 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.9■□□□□ 0.78
PDLIM4P50479 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.9■□□□□ 0.78
PDLIM4P50479 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
PDLIM4P50479 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM4P50479 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM4P50479 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM4P50479 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PDLIM4P50479 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms