Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX2P48431 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX2P48431 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.65■□□□□ 0.9
SOX2P48431 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX2P48431 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SOX2P48431 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX2P48431 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SOX2P48431 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.65■□□□□ 0.9
SOX2P48431 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX2P48431 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX2P48431 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SOX2P48431 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX2P48431 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SOX2P48431 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.64■□□□□ 0.89
SOX2P48431 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SOX2P48431 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SOX2P48431 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.64■□□□□ 0.89
SOX2P48431 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX2P48431 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX2P48431 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX2P48431 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX2P48431 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX2P48431 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.63■□□□□ 0.89
SOX2P48431 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX2P48431 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX2P48431 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SOX2P48431 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX2P48431 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX2P48431 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.62■□□□□ 0.89
SOX2P48431 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.62■□□□□ 0.89
SOX2P48431 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.62■□□□□ 0.89
SOX2P48431 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX2P48431 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SOX2P48431 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SOX2P48431 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX2P48431 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.61■□□□□ 0.89
SOX2P48431 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.61■□□□□ 0.89
SOX2P48431 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SOX2P48431 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SOX2P48431 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX2P48431 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX2P48431 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.6■□□□□ 0.89
SOX2P48431 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.6■□□□□ 0.89
SOX2P48431 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX2P48431 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX2P48431 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX2P48431 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX2P48431 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX2P48431 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX2P48431 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX2P48431 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX2P48431 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SOX2P48431 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.58■□□□□ 0.89
SOX2P48431 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.58■□□□□ 0.89
SOX2P48431 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SOX2P48431 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.58■□□□□ 0.89
SOX2P48431 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SOX2P48431 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX2P48431 MIR3648-2-201ENST00000581792 180 ntBASIC20.58■□□□□ 0.89
SOX2P48431 MIR3648-1-201ENST00000615959 180 ntBASIC20.58■□□□□ 0.89
SOX2P48431 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SOX2P48431 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.58■□□□□ 0.88
SOX2P48431 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SOX2P48431 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX2P48431 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 AC141586.4-201ENST00000624558 1573 ntBASIC20.57■□□□□ 0.88
SOX2P48431 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX2P48431 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SOX2P48431 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SOX2P48431 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX2P48431 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.56■□□□□ 0.88
SOX2P48431 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX2P48431 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms