Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.09■■□□□ 1.13
SOX3P41225 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
SOX3P41225 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.09■■□□□ 1.13
SOX3P41225 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
SOX3P41225 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SOX3P41225 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SOX3P41225 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.08■■□□□ 1.12
SOX3P41225 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
SOX3P41225 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SOX3P41225 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.07■■□□□ 1.12
SOX3P41225 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SOX3P41225 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SOX3P41225 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.07■■□□□ 1.12
SOX3P41225 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SOX3P41225 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SOX3P41225 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
SOX3P41225 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SOX3P41225 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SOX3P41225 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.06■■□□□ 1.12
SOX3P41225 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SOX3P41225 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SOX3P41225 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SOX3P41225 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SOX3P41225 ERN1-208ENST00000606895 2068 ntBASIC22.05■■□□□ 1.12
SOX3P41225 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SOX3P41225 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SOX3P41225 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.05■■□□□ 1.12
SOX3P41225 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.05■■□□□ 1.12
SOX3P41225 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SOX3P41225 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.05■■□□□ 1.12
SOX3P41225 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SOX3P41225 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SOX3P41225 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
SOX3P41225 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SOX3P41225 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.04■■□□□ 1.12
SOX3P41225 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SOX3P41225 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.04■■□□□ 1.12
SOX3P41225 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SOX3P41225 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
SOX3P41225 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SOX3P41225 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.04■■□□□ 1.12
SOX3P41225 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SOX3P41225 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SOX3P41225 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SOX3P41225 LONRF2P2-201ENST00000439212 571 ntBASIC22.03■■□□□ 1.12
SOX3P41225 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SOX3P41225 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
SOX3P41225 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SOX3P41225 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
SOX3P41225 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SOX3P41225 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.02■■□□□ 1.12
SOX3P41225 AC103834.1-201ENST00000520383 144 ntBASIC22.02■■□□□ 1.12
SOX3P41225 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
SOX3P41225 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
SOX3P41225 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SOX3P41225 YBX1P4-201ENST00000392794 808 ntBASIC22.01■■□□□ 1.11
SOX3P41225 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.01■■□□□ 1.11
SOX3P41225 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.01■■□□□ 1.11
SOX3P41225 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.01■■□□□ 1.11
SOX3P41225 AC019171.1-201ENST00000601251 1056 ntBASIC22.01■■□□□ 1.11
SOX3P41225 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.01■■□□□ 1.11
SOX3P41225 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.01■■□□□ 1.11
SOX3P41225 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SOX3P41225 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SOX3P41225 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SOX3P41225 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
SOX3P41225 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22■■□□□ 1.11
SOX3P41225 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
SOX3P41225 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22■■□□□ 1.11
SOX3P41225 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SOX3P41225 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22■■□□□ 1.11
SOX3P41225 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SOX3P41225 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.99■■□□□ 1.11
SOX3P41225 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.99■■□□□ 1.11
SOX3P41225 MIR4508-201ENST00000584178 70 ntBASIC21.99■■□□□ 1.11
SOX3P41225 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.99■■□□□ 1.11
SOX3P41225 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
SOX3P41225 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SOX3P41225 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SOX3P41225 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.98■■□□□ 1.11
SOX3P41225 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX3P41225 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.98■■□□□ 1.11
SOX3P41225 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX3P41225 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.98■■□□□ 1.11
SOX3P41225 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX3P41225 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX3P41225 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SOX3P41225 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX3P41225 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.96■■□□□ 1.11
SOX3P41225 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.96■■□□□ 1.11
SOX3P41225 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms