Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CIITAP33076 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CIITAP33076 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CIITAP33076 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CIITAP33076 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.79■■□□□ 1.88
CIITAP33076 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.79■■□□□ 1.88
CIITAP33076 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CIITAP33076 KRT18P24-201ENST00000344739 1156 ntBASIC26.78■■□□□ 1.88
CIITAP33076 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.78■■□□□ 1.88
CIITAP33076 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CIITAP33076 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CIITAP33076 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CIITAP33076 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
CIITAP33076 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CIITAP33076 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.77■■□□□ 1.88
CIITAP33076 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
CIITAP33076 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
CIITAP33076 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC26.76■■□□□ 1.87
CIITAP33076 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CIITAP33076 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CIITAP33076 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
CIITAP33076 SLC6A10P-202ENST00000431994 2058 ntBASIC26.75■■□□□ 1.87
CIITAP33076 AL451085.2-201ENST00000605085 799 ntBASIC26.75■■□□□ 1.87
CIITAP33076 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC26.75■■□□□ 1.87
CIITAP33076 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CIITAP33076 AL031848.2-201ENST00000607670 837 ntBASIC26.74■■□□□ 1.87
CIITAP33076 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CIITAP33076 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CIITAP33076 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CIITAP33076 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CIITAP33076 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CIITAP33076 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC26.73■■□□□ 1.87
CIITAP33076 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CIITAP33076 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.73■■□□□ 1.87
CIITAP33076 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.73■■□□□ 1.87
CIITAP33076 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.73■■□□□ 1.87
CIITAP33076 AC120024.1-201ENST00000562672 995 ntBASIC26.72■■□□□ 1.87
CIITAP33076 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CIITAP33076 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.71■■□□□ 1.87
CIITAP33076 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CIITAP33076 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.71■■□□□ 1.87
CIITAP33076 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CIITAP33076 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CIITAP33076 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
CIITAP33076 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CIITAP33076 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
CIITAP33076 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
CIITAP33076 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
CIITAP33076 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CIITAP33076 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.7■■□□□ 1.86
CIITAP33076 TK2-216ENST00000564917 1156 ntTSL 3 BASIC26.7■■□□□ 1.86
CIITAP33076 AC011551.1-201ENST00000614101 683 ntBASIC26.7■■□□□ 1.86
CIITAP33076 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.7■■□□□ 1.86
CIITAP33076 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.68■■□□□ 1.86
CIITAP33076 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CIITAP33076 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.68■■□□□ 1.86
CIITAP33076 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CIITAP33076 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CIITAP33076 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CIITAP33076 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CIITAP33076 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
CIITAP33076 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.68■■□□□ 1.86
CIITAP33076 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.67■■□□□ 1.86
CIITAP33076 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CIITAP33076 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
CIITAP33076 THA1P-201ENST00000590384 1145 ntBASIC26.67■■□□□ 1.86
CIITAP33076 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.67■■□□□ 1.86
CIITAP33076 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CIITAP33076 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CIITAP33076 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
CIITAP33076 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.65■■□□□ 1.86
CIITAP33076 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CIITAP33076 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.65■■□□□ 1.86
CIITAP33076 AC009299.2-201ENST00000482477 511 ntBASIC26.65■■□□□ 1.86
CIITAP33076 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CIITAP33076 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.65■■□□□ 1.86
CIITAP33076 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.65■■□□□ 1.86
CIITAP33076 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CIITAP33076 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.65■■□□□ 1.86
CIITAP33076 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
CIITAP33076 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.65■■□□□ 1.86
CIITAP33076 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.65■■□□□ 1.86
CIITAP33076 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CIITAP33076 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CIITAP33076 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.64■■□□□ 1.86
CIITAP33076 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CIITAP33076 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.64■■□□□ 1.86
CIITAP33076 AC090877.2-201ENST00000558441 1738 ntBASIC26.64■■□□□ 1.85
CIITAP33076 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.64■■□□□ 1.85
CIITAP33076 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
CIITAP33076 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CIITAP33076 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CIITAP33076 AL035685.1-201ENST00000636663 812 ntBASIC26.63■■□□□ 1.85
CIITAP33076 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CIITAP33076 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.62■■□□□ 1.85
CIITAP33076 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CIITAP33076 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CIITAP33076 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CIITAP33076 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CIITAP33076 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms