Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC6A1P30531 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.3■□□□□ 0.84
SLC6A1P30531 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SLC6A1P30531 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC6A1P30531 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A1P30531 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.3■□□□□ 0.84
SLC6A1P30531 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC6A1P30531 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SLC6A1P30531 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A1P30531 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A1P30531 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.29■□□□□ 0.84
SLC6A1P30531 AC004812.2-201ENST00000611079 2094 ntBASIC20.29■□□□□ 0.84
SLC6A1P30531 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A1P30531 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A1P30531 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC6A1P30531 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC6A1P30531 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.28■□□□□ 0.84
SLC6A1P30531 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SLC6A1P30531 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC6A1P30531 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC6A1P30531 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SLC6A1P30531 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC6A1P30531 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.27■□□□□ 0.84
SLC6A1P30531 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC6A1P30531 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SLC6A1P30531 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC6A1P30531 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SLC6A1P30531 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.27■□□□□ 0.83
SLC6A1P30531 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
SLC6A1P30531 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC6A1P30531 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC6A1P30531 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC6A1P30531 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC6A1P30531 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SLC6A1P30531 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC6A1P30531 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC6A1P30531 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.26■□□□□ 0.83
SLC6A1P30531 ABCB10P4-201ENST00000566803 2184 ntBASIC20.26■□□□□ 0.83
SLC6A1P30531 LINC00565-201ENST00000562710 2331 ntBASIC20.26■□□□□ 0.83
SLC6A1P30531 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC6A1P30531 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC6A1P30531 SLC6A10P-202ENST00000431994 2058 ntBASIC20.25■□□□□ 0.83
SLC6A1P30531 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SLC6A1P30531 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC6A1P30531 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC6A1P30531 DUX4L11-201ENST00000611504 1267 ntBASIC20.25■□□□□ 0.83
SLC6A1P30531 DUX4L12-201ENST00000614593 1267 ntBASIC20.25■□□□□ 0.83
SLC6A1P30531 DUX4L14-201ENST00000621227 1267 ntBASIC20.25■□□□□ 0.83
SLC6A1P30531 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SLC6A1P30531 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC6A1P30531 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC6A1P30531 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 MIR639-201ENST00000384974 98 ntBASIC20.24■□□□□ 0.83
SLC6A1P30531 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.24■□□□□ 0.83
SLC6A1P30531 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SLC6A1P30531 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SLC6A1P30531 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SLC6A1P30531 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.23■□□□□ 0.83
SLC6A1P30531 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC6A1P30531 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SLC6A1P30531 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC6A1P30531 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC6A1P30531 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SLC6A1P30531 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC6A1P30531 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC6A1P30531 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC6A1P30531 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC6A1P30531 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SLC6A1P30531 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC6A1P30531 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC6A1P30531 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC6A1P30531 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC6A1P30531 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
SLC6A1P30531 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.22■□□□□ 0.83
SLC6A1P30531 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.22■□□□□ 0.83
SLC6A1P30531 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
SLC6A1P30531 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SLC6A1P30531 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC6A1P30531 MIR3648-2-201ENST00000581792 180 ntBASIC20.21■□□□□ 0.83
SLC6A1P30531 MIR3648-1-201ENST00000615959 180 ntBASIC20.21■□□□□ 0.83
SLC6A1P30531 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.21■□□□□ 0.83
SLC6A1P30531 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SLC6A1P30531 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SLC6A1P30531 EP400NL-214ENST00000641289 2402 ntBASIC20.21■□□□□ 0.83
SLC6A1P30531 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC6A1P30531 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.2■□□□□ 0.82
SLC6A1P30531 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.2■□□□□ 0.82
SLC6A1P30531 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.2■□□□□ 0.82
SLC6A1P30531 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.2■□□□□ 0.82
SLC6A1P30531 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC6A1P30531 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SLC6A1P30531 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SLC6A1P30531 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SLC6A1P30531 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SLC6A1P30531 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms