Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.78■□□□□ 0.92
COL8A1P27658 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.78■□□□□ 0.92
COL8A1P27658 AF213884.3-201ENST00000563833 479 ntBASIC20.78■□□□□ 0.92
COL8A1P27658 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
COL8A1P27658 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
COL8A1P27658 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.77■□□□□ 0.92
COL8A1P27658 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL8A1P27658 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL8A1P27658 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL8A1P27658 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL8A1P27658 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
COL8A1P27658 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.77■□□□□ 0.92
COL8A1P27658 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL8A1P27658 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL8A1P27658 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.76■□□□□ 0.91
COL8A1P27658 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL8A1P27658 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.76■□□□□ 0.91
COL8A1P27658 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.76■□□□□ 0.91
COL8A1P27658 RARRES2P11-201ENST00000635158 484 ntBASIC20.76■□□□□ 0.91
COL8A1P27658 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL8A1P27658 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
COL8A1P27658 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL8A1P27658 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.75■□□□□ 0.91
COL8A1P27658 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL8A1P27658 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL8A1P27658 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL8A1P27658 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL8A1P27658 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.74■□□□□ 0.91
COL8A1P27658 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL8A1P27658 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL8A1P27658 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL8A1P27658 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL8A1P27658 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL8A1P27658 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.73■□□□□ 0.91
COL8A1P27658 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL8A1P27658 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL8A1P27658 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.73■□□□□ 0.91
COL8A1P27658 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL8A1P27658 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
COL8A1P27658 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL8A1P27658 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.72■□□□□ 0.91
COL8A1P27658 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL8A1P27658 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL8A1P27658 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.71■□□□□ 0.91
COL8A1P27658 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL8A1P27658 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL8A1P27658 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL8A1P27658 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL8A1P27658 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.7■□□□□ 0.9
COL8A1P27658 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.7■□□□□ 0.9
COL8A1P27658 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.7■□□□□ 0.9
COL8A1P27658 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL8A1P27658 MIR939-201ENST00000401314 82 ntBASIC20.69■□□□□ 0.9
COL8A1P27658 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.69■□□□□ 0.9
COL8A1P27658 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.69■□□□□ 0.9
COL8A1P27658 IKBKGP1-201ENST00000612193 1073 ntBASIC20.69■□□□□ 0.9
COL8A1P27658 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL8A1P27658 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL8A1P27658 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.68■□□□□ 0.9
COL8A1P27658 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL8A1P27658 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL8A1P27658 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL8A1P27658 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL8A1P27658 SRD5A1P1-201ENST00000442297 786 ntBASIC20.67■□□□□ 0.9
COL8A1P27658 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL8A1P27658 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.67■□□□□ 0.9
COL8A1P27658 AP001330.3-201ENST00000520123 633 ntBASIC20.67■□□□□ 0.9
COL8A1P27658 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.67■□□□□ 0.9
COL8A1P27658 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.67■□□□□ 0.9
COL8A1P27658 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.67■□□□□ 0.9
COL8A1P27658 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL8A1P27658 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL8A1P27658 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL8A1P27658 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL8A1P27658 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL8A1P27658 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL8A1P27658 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL8A1P27658 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.66■□□□□ 0.9
COL8A1P27658 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.66■□□□□ 0.9
COL8A1P27658 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.66■□□□□ 0.9
COL8A1P27658 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
COL8A1P27658 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL8A1P27658 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL8A1P27658 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.65■□□□□ 0.9
COL8A1P27658 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.65■□□□□ 0.9
COL8A1P27658 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.65■□□□□ 0.9
COL8A1P27658 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.65■□□□□ 0.9
COL8A1P27658 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL8A1P27658 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.65■□□□□ 0.9
COL8A1P27658 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
COL8A1P27658 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms