Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.84■■■□□ 2.21
COL1A1P02452 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
COL1A1P02452 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
COL1A1P02452 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
COL1A1P02452 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
COL1A1P02452 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
COL1A1P02452 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC28.83■■■□□ 2.21
COL1A1P02452 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL1A1P02452 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL1A1P02452 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
COL1A1P02452 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC28.82■■■□□ 2.2
COL1A1P02452 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC28.82■■■□□ 2.2
COL1A1P02452 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL1A1P02452 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
COL1A1P02452 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC28.82■■■□□ 2.2
COL1A1P02452 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL1A1P02452 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL1A1P02452 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
COL1A1P02452 PEMT-206ENST00000435340 960 ntTSL 5 BASIC28.81■■■□□ 2.2
COL1A1P02452 AC137630.3-201ENST00000607245 391 ntBASIC28.81■■■□□ 2.2
COL1A1P02452 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
COL1A1P02452 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
COL1A1P02452 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.8■■■□□ 2.2
COL1A1P02452 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL1A1P02452 AC010501.1-201ENST00000606270 1962 ntBASIC28.79■■■□□ 2.2
COL1A1P02452 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.79■■■□□ 2.2
COL1A1P02452 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
COL1A1P02452 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
COL1A1P02452 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
COL1A1P02452 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL1A1P02452 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL1A1P02452 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
COL1A1P02452 AC011551.1-201ENST00000614101 683 ntBASIC28.78■■■□□ 2.2
COL1A1P02452 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL1A1P02452 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL1A1P02452 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL1A1P02452 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC28.77■■■□□ 2.2
COL1A1P02452 AC021242.3-201ENST00000607598 1377 ntBASIC28.77■■■□□ 2.2
COL1A1P02452 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.77■■■□□ 2.2
COL1A1P02452 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC28.76■■■□□ 2.19
COL1A1P02452 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.19
COL1A1P02452 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 MIR935-201ENST00000401179 91 ntBASIC28.76■■■□□ 2.19
COL1A1P02452 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL1A1P02452 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
COL1A1P02452 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
COL1A1P02452 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
COL1A1P02452 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC28.75■■■□□ 2.19
COL1A1P02452 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC28.75■■■□□ 2.19
COL1A1P02452 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
COL1A1P02452 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
COL1A1P02452 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC28.74■■■□□ 2.19
COL1A1P02452 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL1A1P02452 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
COL1A1P02452 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL1A1P02452 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
COL1A1P02452 FOXO3B-201ENST00000395675 1928 ntBASIC28.74■■■□□ 2.19
COL1A1P02452 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
COL1A1P02452 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28.73■■■□□ 2.19
COL1A1P02452 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
COL1A1P02452 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
COL1A1P02452 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
COL1A1P02452 MIR638-201ENST00000385237 100 ntBASIC28.72■■■□□ 2.19
COL1A1P02452 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC28.72■■■□□ 2.19
COL1A1P02452 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC28.72■■■□□ 2.19
COL1A1P02452 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.72■■■□□ 2.19
COL1A1P02452 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
COL1A1P02452 SENP5-202ENST00000419026 973 ntTSL 3 BASIC28.72■■■□□ 2.19
COL1A1P02452 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC28.72■■■□□ 2.19
COL1A1P02452 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC28.72■■■□□ 2.19
COL1A1P02452 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC28.72■■■□□ 2.19
COL1A1P02452 AC092803.2-201ENST00000564287 1899 ntBASIC28.71■■■□□ 2.19
COL1A1P02452 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC28.7■■■□□ 2.19
COL1A1P02452 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
COL1A1P02452 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
COL1A1P02452 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC28.7■■■□□ 2.18
COL1A1P02452 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC28.7■■■□□ 2.18
COL1A1P02452 GAK-223ENST00000628912 497 ntTSL 5 BASIC28.7■■■□□ 2.18
COL1A1P02452 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
COL1A1P02452 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
COL1A1P02452 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.18
COL1A1P02452 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
COL1A1P02452 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
COL1A1P02452 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
COL1A1P02452 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC28.69■■■□□ 2.18
COL1A1P02452 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC28.69■■■□□ 2.18
COL1A1P02452 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC28.68■■■□□ 2.18
COL1A1P02452 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
COL1A1P02452 AC131281.2-201ENST00000520478 145 ntBASIC28.67■■■□□ 2.18
COL1A1P02452 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC28.67■■■□□ 2.18
COL1A1P02452 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.67■■■□□ 2.18
COL1A1P02452 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
COL1A1P02452 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.67■■■□□ 2.18
COL1A1P02452 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms