Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.86■■■□□ 2.37
NPHP1O15259 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
NPHP1O15259 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
NPHP1O15259 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC29.85■■■□□ 2.37
NPHP1O15259 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP1O15259 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.85■■■□□ 2.37
NPHP1O15259 AC096631.2-201ENST00000436136 790 ntBASIC29.85■■■□□ 2.37
NPHP1O15259 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP1O15259 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP1O15259 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP1O15259 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC29.84■■■□□ 2.37
NPHP1O15259 SENP5-202ENST00000419026 973 ntTSL 3 BASIC29.84■■■□□ 2.37
NPHP1O15259 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC29.84■■■□□ 2.37
NPHP1O15259 AC110285.6-201ENST00000617652 491 ntBASIC29.84■■■□□ 2.37
NPHP1O15259 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.84■■■□□ 2.37
NPHP1O15259 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
NPHP1O15259 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.84■■■□□ 2.37
NPHP1O15259 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
NPHP1O15259 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
NPHP1O15259 SNAI3-AS1-204ENST00000567997 2048 ntBASIC29.84■■■□□ 2.37
NPHP1O15259 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
NPHP1O15259 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC29.83■■■□□ 2.37
NPHP1O15259 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
NPHP1O15259 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC29.83■■■□□ 2.37
NPHP1O15259 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC29.83■■■□□ 2.37
NPHP1O15259 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.83■■■□□ 2.37
NPHP1O15259 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.83■■■□□ 2.37
NPHP1O15259 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC29.82■■■□□ 2.36
NPHP1O15259 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC29.82■■■□□ 2.36
NPHP1O15259 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
NPHP1O15259 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.81■■■□□ 2.36
NPHP1O15259 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC29.81■■■□□ 2.36
NPHP1O15259 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.81■■■□□ 2.36
NPHP1O15259 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP1O15259 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP1O15259 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP1O15259 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP1O15259 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP1O15259 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC29.8■■■□□ 2.36
NPHP1O15259 CLTA-210ENST00000540080 989 ntTSL 2 BASIC29.8■■■□□ 2.36
NPHP1O15259 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP1O15259 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
NPHP1O15259 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP1O15259 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP1O15259 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC29.79■■■□□ 2.36
NPHP1O15259 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
NPHP1O15259 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC29.78■■■□□ 2.36
NPHP1O15259 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
NPHP1O15259 MIR4466-201ENST00000606121 54 ntBASIC29.78■■■□□ 2.36
NPHP1O15259 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
NPHP1O15259 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.78■■■□□ 2.36
NPHP1O15259 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC29.78■■■□□ 2.36
NPHP1O15259 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC29.77■■■□□ 2.36
NPHP1O15259 AC005837.3-201ENST00000612163 286 ntBASIC29.77■■■□□ 2.36
NPHP1O15259 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
NPHP1O15259 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
NPHP1O15259 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
NPHP1O15259 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC29.75■■■□□ 2.35
NPHP1O15259 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
NPHP1O15259 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP1O15259 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP1O15259 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC29.74■■■□□ 2.35
NPHP1O15259 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC29.74■■■□□ 2.35
NPHP1O15259 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP1O15259 CD72-202ENST00000378430 585 ntTSL 3 BASIC29.74■■■□□ 2.35
NPHP1O15259 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP1O15259 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP1O15259 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP1O15259 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC29.73■■■□□ 2.35
NPHP1O15259 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC29.73■■■□□ 2.35
NPHP1O15259 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP1O15259 SSSCA1-AS1-201ENST00000567594 614 ntBASIC29.72■■■□□ 2.35
NPHP1O15259 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP1O15259 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP1O15259 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP1O15259 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
NPHP1O15259 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC29.71■■■□□ 2.35
NPHP1O15259 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP1O15259 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
NPHP1O15259 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP1O15259 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP1O15259 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.69■■■□□ 2.34
NPHP1O15259 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC29.69■■■□□ 2.34
NPHP1O15259 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC29.69■■■□□ 2.34
NPHP1O15259 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.69■■■□□ 2.34
NPHP1O15259 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP1O15259 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP1O15259 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
NPHP1O15259 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP1O15259 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.68■■■□□ 2.34
NPHP1O15259 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.67■■■□□ 2.34
NPHP1O15259 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP1O15259 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP1O15259 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC29.66■■■□□ 2.34
NPHP1O15259 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC29.66■■■□□ 2.34
NPHP1O15259 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP1O15259 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP1O15259 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP1O15259 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP1O15259 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms